SFD244
Library SF
(Link to library)
Clone ID SFD244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14926-1
Original site URL
Representative seq. ID SFD244P
(Link to Original site)
Representative DNA sequence
>SFD244 (SFD244Q) /CSM/SF/SFD2-B/SFD244Q.Seq.d/
ATTACAACTCAAACATCCACCATCACTTTTTATAGTATTACTACTTTAAAATTTGACCTA
TTTTTTATTTATTAAATTAAATAATTCATTGTAAATTCGATAATAAGGGGATTTAAAAAA
GGAATCATTTTTTTTCACTCTTTATTTTGTACACTATAAAAAAAAAAXXXXXXXXXXGTA
CTCACACTCTATGCTCAAGGTCTCTTGACTGGTGTTGTCGTAGATTCAGGTGATGGTGTC
ACCCATATCATTCCAGTCTATGAGGGTTACTCAATCCCACATTTGACTCGTCGTCTCGAT
GTTGCCGGTCGTGATGTAACTCGTTACCTCATCAAATTATTATTACTCCGTGGTTACGCT
TTCAATCGTACCGCCGATTTCGAAACCATCCGTCAAATCAAAGAGAAACTCTGTTATGTC
GCATACGATGTTCAACAAGAGATGAAATTGGCCTCAGAGACCACTGTTCTCGTCGAAAAC
TACACCCTCCCAGACGGTCGTGTAATCAAAGTTGGCCAAGAGAGATTCCAAGCCTCTGAA
GCCCTCTTCAATCCATCTTTGGTCGATGTCGAAGGTGGTGGTGTCCATGAACAATTGTTT
GATTGTATCACCAAGGCAGACCGTGATCTTCAACAAGGTTTCTATCAACATATCGTCCTT
TCTGGTGGTTCCTCTATGTATCCAGGTTTACCATC
sequence update 2001. 6. 1
Translated Amino Acid sequence
lqlkhppslfivlll*nltyflfiklnnsl*ir**GDLKKESFFFTLYFVHYKKK---

---VLTLYAQGLLTGVVVDSGDGVTHIIPVYEGYSIPHLTRRLDVAGRDVTRYLIKLLLL
RGYAFNRTADFETIRQIKEKLCYVAYDVQQEMKLASETTVLVENYTLPDGRVIKVGQERF
QASEALFNPSLVDVEGGGVHEQLFDCITKADRDLQQGFYQHIVLSGGSSMYPGLP


Translated Amino Acid sequence (All Frames)
Frame A:
ittqtstitfysittlkfdlffiy*ik*fivnsiirgfkkgiiffhslfctl*kk---

---VLTLYAQGLLTGVVVDSGDGVTHIIPVYEGYSIPHLTRRLDVAGRDVTRYLIKLLLL
RGYAFNRTADFETIRQIKEKLCYVAYDVQQEMKLASETTVLVENYTLPDGRVIKVGQERF
QASEALFNPSLVDVEGGGVHEQLFDCITKADRDLQQGFYQHIVLSGGSSMYPGLP

Frame B:
lqlkhppslfivlll*nltyflfiklnnsl*ir**GDLKKESFFFTLYFVHYKKK---

---yshsmlkvs*lvls*iqvmvspisfqsmrvtqshi*lvvsmlpvvm*lvtssnyyys
vvtlsivppiskpsvkskrnsvmshtmfnkr*nwpqrplfsskttpsqtvv*sklakrds
kplkpssihlwsmskvvvsmnnclivsprqtvifnkvsinissflvvplciqvyh

Frame C:
ynsnihhhfl*yyyfki*pifylln*iihckfdnkgi*krnhffslfilytikkk---

---thtlcsrsldwccrrfr*wchpyhssl*gllnptfdsssrccrs*cnslphqiiitp
wlrfqsyrrfrnhpsnqretllcrircstrdeiglrdhcsrrklhpprrscnqswpreip
sl*splqsifgrcrrwwcp*tiv*lyhqgrp*sstrflstyrpfwwflyvsrfti

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD448 (VFD448Q) /CSM/VF/VFD4-B/VFD448Q.Seq.d/ 1027 0.0
SFD244 (SFD244Q) /CSM/SF/SFD2-B/SFD244Q.Seq.d/ 1027 0.0
FC-AH01 (FC-AH01Q) /CSM/FC/FC-AH/FC-AH01Q.Seq.d/ 1027 0.0
FC-131 (FC-131Q) /CSM/CG/CG-FC/FC-131Q.Seq.d/ 1027 0.0
AFJ315 (AFJ315Q) /CSM/AF/AFJ3-A/AFJ315Q.Seq.d/ 1027 0.0
AFJ122 (AFJ122Q) /CSM/AF/AFJ1-A/AFJ122Q.Seq.d/ 1015 0.0
SLB194 (SLB194Q) /CSM/SL/SLB1-D/SLB194Q.Seq.d/ 1007 0.0
AFC587 (AFC587Q) /CSM/AF/AFC5-D/AFC587Q.Seq.d/ 965 0.0
AFD277 (AFD277Q) /CSM/AF/AFD2-D/AFD277Q.Seq.d/ 950 0.0
AFM162 (AFM162Q) /CSM/AF/AFM1-C/AFM162Q.Seq.d/ 940 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF095929|AF095929.1 Dictyostelium discoideum actin related protein 2 (arpB) mRNA, complete cds. 1027 0.0 3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 1027 0.0 8
U29609|U29609.1 Acanthamoeba castellanii actin-related protein 2 Arp2 mRNA, complete cds. 50 5e-08 2
CF590374|CF590374.1 AGENCOURT_15660312 NICHD_XGC_Swb1N Silurana tropicalis cDNA clone IMAGE:7021936 5', mRNA sequence. 66 7e-07 1
AL643682|AL643682.1 Xenopus tropicalis EST, clone L1G2c08 5'. 66 7e-07 1
BG815869|BG815869.1 dad74f10.y1 Wellcome CRC pCS107 tropicalis egg Silurana tropicalis cDNA clone IMAGE:4465314 5' similar to SW:ARP2_HUMAN O15142 ACTIN-LIKE PROTEIN 2. ;, mRNA sequence. 66 7e-07 1
AL654278|AL654278.2 Xenopus tropicalis EST, clone TGas034f18 5'. 66 7e-07 1
AL849378|AL849378.2 Xenopus tropicalis EST, clone TEgg061b03 5'. 66 7e-07 1
AL868726|AL868726.2 Xenopus tropicalis EST, clone TEgg121j12 5'. 66 7e-07 1
BQ521664|BQ521664.1 NISC_nl12c08.y1 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:5336079 5', mRNA sequence. 66 7e-07 1
dna update 2003.12.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O96621) RecName: Full=Actin-related protein 2; AltName: Full=Ac... 310 3e-83
(P53487) RecName: Full=Actin-related protein 2; AltName: Full=Ac... 241 1e-62
BC047530_1(BC047530|pid:none) Mus musculus ARP2 actin-related pr... 241 2e-62
(Q5BL41) RecName: Full=Actin-related protein 2; AltName: Full=Ac... 241 2e-62
AY891099_1(AY891099|pid:none) Synthetic construct Homo sapiens c... 241 2e-62
(Q5M7U6) RecName: Full=Actin-related protein 2; AltName: Full=Ac... 241 2e-62
BC036253_1(BC036253|pid:none) Homo sapiens ARP2 actin-related pr... 241 2e-62
(P53488) RecName: Full=Actin-related protein 2; AltName: Full=Ac... 241 2e-62
(Q7ZTP2) RecName: Full=Actin-related protein 2-A; AltName: Full=... 241 2e-62
AK301634_1(AK301634|pid:none) Homo sapiens cDNA FLJ51655 complet... 240 3e-62
protein update 2009. 5.23
PSORT

psg: 0.97 gvh: 0.45 alm: 0.40 top: 0.70 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFD244 is cyt

5' end seq. ID SFD244F
5' end seq.
>SFD244F.Seq
ATTACAACTCAAACATCCACCATCACTTTTTATAGTATTACTACTTTAAAATTTGACCTA
TTTTTTATTTATTAAATTAAATAATTCATTGTAAATTCGATAATAAGGGGATTTAAAAAA
GGAATCATTTTTTTTCACTCTTTATTTTGTACACTATAAAAAAAAAA----------
Length of 5' end seq. 167
3' end seq. ID SFD244Z
3' end seq.
>SFD244Z.Seq
----------GTACTCACACTCTATGCTCAAGGTCTCTTGACTGGTGTTGTCGTAGATTC
AGGTGATGGTGTCACCCATATCATTCCAGTCTATGAGGGTTACTCAATCCCACATTTGAC
TCGTCGTCTCGATGTTGCCGGTCGTGATGTAACTCGTTACCTCATCAAATTATTATTACT
CCGTGGTTACGCTTTCAATCGTACCGCCGATTTCGAAACCATCCGTCAAATCAAAGAGAA
ACTCTGTTATGTCGCATACGATGTTCAACAAGAGATGAAATTGGCCTCAGAGACCACTGT
TCTCGTCGAAAACTACACCCTCCCAGACGGTCGTGTAATCAAAGTTGGCCAAGAGAGATT
CCAAGCCTCTGAAGCCCTCTTCAATCCATCTTTGGTCGATGTCGAAGGTGGTGGTGTCCA
TGAACAATTGTTTGATTGTATCACCAAGGCAGACCGTGATCTTCAACAAGGTTTCTATCA
ACATATCGTCCTTTCTGGTGGTTCCTCTATGTATCCAGGTTTACCATC
Length of 3' end seq. 518
Connected seq. ID SFD244P
Connected seq.
>SFD244P.Seq
ATTACAACTCAAACATCCACCATCACTTTTTATAGTATTACTACTTTAAAATTTGACCTA
TTTTTTATTTATTAAATTAAATAATTCATTGTAAATTCGATAATAAGGGGATTTAAAAAA
GGAATCATTTTTTTTCACTCTTTATTTTGTACACTATAAAAAAAAAA----------GTA
CTCACACTCTATGCTCAAGGTCTCTTGACTGGTGTTGTCGTAGATTCAGGTGATGGTGTC
ACCCATATCATTCCAGTCTATGAGGGTTACTCAATCCCACATTTGACTCGTCGTCTCGAT
GTTGCCGGTCGTGATGTAACTCGTTACCTCATCAAATTATTATTACTCCGTGGTTACGCT
TTCAATCGTACCGCCGATTTCGAAACCATCCGTCAAATCAAAGAGAAACTCTGTTATGTC
GCATACGATGTTCAACAAGAGATGAAATTGGCCTCAGAGACCACTGTTCTCGTCGAAAAC
TACACCCTCCCAGACGGTCGTGTAATCAAAGTTGGCCAAGAGAGATTCCAAGCCTCTGAA
GCCCTCTTCAATCCATCTTTGGTCGATGTCGAAGGTGGTGGTGTCCATGAACAATTGTTT
GATTGTATCACCAAGGCAGACCGTGATCTTCAACAAGGTTTCTATCAACATATCGTCCTT
TCTGGTGGTTCCTCTATGTATCCAGGTTTACCATC
Length of connected seq. 685
Full length Seq ID -
Full length Seq. -
Length of full length seq. -