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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD231
Library SF
(Link to library)
Clone ID SFD231
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16295-1
Original site URL
Representative seq. ID SFD231P
(Link to Original site)
Representative DNA sequence 
>SFD231 (SFD231Q) /CSM/SF/SFD2-B/SFD231Q.Seq.d/
AAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTA
TATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGA
CTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATC
TCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGA
TGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATA
TGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACA
TTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGA
TCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACCXXXXXXXXX
XTTTAGACCAGATTATCATTTATTAGAGTTTAAAACAGATTTTCCATTACAATGCCACCA
CTTGGAAAATGGTACTTGCTATGAAGTTGAACCTCCCTCAAGATTAAGTTCTCCAGTAAC
TACTATTGCATCAACTGCAACCACTATTGTATCAACAATTACCGAAATTCCAATTGAGAC
AACAACAACAACAACAATAACAACTTCATCAACTGTAAGTGGAGGAAGTGGGTCAACAAT
TGGAGGATCGACAGTAACAACATCAGCTACTATCGGAGTTACTACCTCTATAAGTGGAAG
TGATAGTCCTATTATTTATGACCCATGTTCAATTTTCAAATGTGGACATGGTAAACGTTG
TTATAATATTGATGATTCTCCAATTTGTATTAAAACTGATTGTTTATCATGTGAAGATTT
AGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAAAATAT
TACATGTAGAGACTGTTGCCAATATATTCCAACATGCTCAACATAATATCAATTGATATT
ATTTATTTTTACCATAAGGTCACCCAATTGTTTGTTTTGTTTTTTTTTTAATTTAAAAAG
GGCAAGCAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDFDMDEVQDNTFSMDYLLAKS
QFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYAEEGSKTTTSGFKYFDFTKH
YYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFFP---

---FRPDYHLLEFKTDFPLQCHHLENGTCYEVEPPSRLSSPVTTIASTATTIVSTITEIP
IETTTTTTITTSSTVSGGSGSTIGGSTVTTSATIGVTTSISGSDSPIIYDPCSIFKCGHG
KRCYNIDDSPICIKTDCLSCEDLDCPSQGLKCISFKVNRHKNITCRDCCQYIPTCST*yq
lilfiftirspnclfcfffnlkrask
Translated Amino Acid sequence (All Frames) 
Frame A:
kledngffns*ffmyifdflyfhis*wsninmv*ckqqsrl*ygrssr*yifnglfis*i
sihtrwtfndifiwk*pni**nn*kdfigp**inf*wldicrrrfknnyiwf*if*fykt
llq**ilss**frfwk*wigs*l*mvrkitfcklfpt---

---FRPDYHLLEFKTDFPLQCHHLENGTCYEVEPPSRLSSPVTTIASTATTIVSTITEIP
IETTTTTTITTSSTVSGGSGSTIGGSTVTTSATIGVTTSISGSDSPIIYDPCSIFKCGHG
KRCYNIDDSPICIKTDCLSCEDLDCPSQGLKCISFKVNRHKNITCRDCCQYIPTCST*yq
lilfiftirspnclfcfffnlkrask

Frame B:
NWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDFDMDEVQDNTFSMDYLLAKS
QFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYAEEGSKTTTSGFKYFDFTKH
YYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFFP---

---ldqiiiy*slkqifhynattwkmvlamklnlpqd*vlq*lllhqlqpllyqqlpkfq
lrqqqqqq*qlhql*veevgqqledrq*qhqllsellpl*vevivllfmthvqfsnvdmv
nvviilmilqfvlklivyhvki*ialpkd*nvyplkltgikilhvetvanifqhaqhnin
*yylflp*ghpivcfvffli*kgqa

Frame C:
igrqwlf*fivfyvyf*flifpyqlmvky*hglm*ttiqtliwtkfkiihfqwiiy*lnl
nshqmdfq*hihmeiaqhmmk*lkrfywsimnqllmvghmqkkvqkqlhlvlnililqni
itminsfqliv*vleimdwiiiingaqdyil*afsh---

---*trlsfirv*nrfsitmpplgkwyll*s*tslkikfssnyycincnhycinnyrnsn
*dnnnnnnnnfinckwrkwvnnwridsnnisyyrsyylykwk**syyl*pmfnfqmwtw*
tll*y**fsnly*n*lfim*rfrlpfpriemyil*s*qa*kyym*rllpiysnmlniisi
diiyfyhkvtqlfvlfff*fkkgkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE256 (SLE256Q) /CSM/SL/SLE2-C/SLE256Q.Seq.d/                        823   0.0
SFK857 (SFK857Q) /CSM/SF/SFK8-C/SFK857Q.Seq.d/                        823   0.0
SFK624 (SFK624Q) /CSM/SF/SFK6-A/SFK624Q.Seq.d/                        823   0.0
SFK572 (SFK572Q) /CSM/SF/SFK5-C/SFK572Q.Seq.d/                        823   0.0
SFK288 (SFK288Q) /CSM/SF/SFK2-D/SFK288Q.Seq.d/                        823   0.0
SFJ874 (SFJ874Q) /CSM/SF/SFJ8-D/SFJ874Q.Seq.d/                        823   0.0
SFI571 (SFI571Q) /CSM/SF/SFI5-C/SFI571Q.Seq.d/                        823   0.0
SFI558 (SFI558Q) /CSM/SF/SFI5-C/SFI558Q.Seq.d/                        823   0.0
SFI512 (SFI512Q) /CSM/SF/SFI5-A/SFI512Q.Seq.d/                        823   0.0
SFI122 (SFI122Q) /CSM/SF/SFI1-A/SFI122Q.Seq.d/                        823   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   735   0.0    13
AC139562|AC139562.2 Mus musculus clone RP24-180G11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    56   0.001  1
AC024694|AC024694.1 Mus musculus clone RP23-189B10, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    56   0.001  1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   0.001  15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.016  10
BF697109|BF697109.1 602129509F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4286115 5', mRNA sequence.    52   0.016  1
AL592074|AL592074.3 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-300L8.    40   0.031  8
AL591004|AL591004.3 Human DNA sequence from clone RP11-497F24 on chromosome 6.    40   0.031  8
AP001676|AP001676.1 Homo sapiens genomic DNA, chromosome 21q, section 20/105.    34   0.036  13
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    30   0.060  17
dna update 2003.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    50   1e-04
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 49   3e-04
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 46   0.002
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 46   0.002
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    46   0.003
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    46   0.003
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    43   0.016
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 43   0.016
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 42   0.037
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    42   0.048
protein update 2009. 1. 7
PSORT 

 psg: 0.98  gvh: 0.59  alm: 0.25  top: -0.03  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SFD231 is end
5' end seq. ID SFD231F
5' end seq. 
>SFD231F.Seq
AAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTA
TATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGA
CTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATC
TCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGA
TGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATA
TGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACA
TTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGA
TCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACC---------
-
Length of 5' end seq. 471
3' end seq. ID SFD231Z
3' end seq. 
>SFD231Z.Seq
----------TTTAGACCAGATTATCATTTATTAGAGTTTAAAACAGATTTTCCATTACA
ATGCCACCACTTGGAAAATGGTACTTGCTATGAAGTTGAACCTCCCTCAAGATTAAGTTC
TCCAGTAACTACTATTGCATCAACTGCAACCACTATTGTATCAACAATTACCGAAATTCC
AATTGAGACAACAACAACAACAACAATAACAACTTCATCAACTGTAAGTGGAGGAAGTGG
GTCAACAATTGGAGGATCGACAGTAACAACATCAGCTACTATCGGAGTTACTACCTCTAT
AAGTGGAAGTGATAGTCCTATTATTTATGACCCATGTTCAATTTTCAAATGTGGACATGG
TAAACGTTGTTATAATATTGATGATTCTCCAATTTGTATTAAAACTGATTGTTTATCATG
TGAAGATTTAGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCA
TAAAAATATTACATGTAGAGACTGTTGCCAATATATTCCAACATGCTCAACATAATATCA
ATTGATATTATTTATTTTTACCATAAGGTCACCCAATTGTTTGTTTTGTTTTTTTTTTAA
TTTAAAAAGGGCAAGCAAA
Length of 3' end seq. 609
Connected seq. ID SFD231P
Connected seq. 
>SFD231P.Seq
AAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTA
TATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGA
CTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATC
TCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGA
TGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATA
TGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACA
TTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGA
TCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACC---------
-TTTAGACCAGATTATCATTTATTAGAGTTTAAAACAGATTTTCCATTACAATGCCACCA
CTTGGAAAATGGTACTTGCTATGAAGTTGAACCTCCCTCAAGATTAAGTTCTCCAGTAAC
TACTATTGCATCAACTGCAACCACTATTGTATCAACAATTACCGAAATTCCAATTGAGAC
AACAACAACAACAACAATAACAACTTCATCAACTGTAAGTGGAGGAAGTGGGTCAACAAT
TGGAGGATCGACAGTAACAACATCAGCTACTATCGGAGTTACTACCTCTATAAGTGGAAG
TGATAGTCCTATTATTTATGACCCATGTTCAATTTTCAAATGTGGACATGGTAAACGTTG
TTATAATATTGATGATTCTCCAATTTGTATTAAAACTGATTGTTTATCATGTGAAGATTT
AGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAAAATAT
TACATGTAGAGACTGTTGCCAATATATTCCAACATGCTCAACATAATATCAATTGATATT
ATTTATTTTTACCATAAGGTCACCCAATTGTTTGTTTTGTTTTTTTTTTAATTTAAAAAG
GGCAAGCAAA
Length of connected seq. 1080
Full length Seq ID -
Full length Seq. -
Length of full length seq. -