SFD207
Library SF
(Link to library)
Clone ID SFD207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID SFD207P
(Link to Original site)
Representative DNA sequence
>SFD207 (SFD207Q) /CSM/SF/SFD2-A/SFD207Q.Seq.d/
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGNNNTAATTAGAGNNGGNNCAANNNATACATTNATT
ACATTNGGNGCTGGNTGNNNAATNGGNNAAAACTTAATXXXXXXXXXXANAAAGATAATG
AAGCAAGTGGTAGTAGTAACAATAATGATGATGNNAATTTAAATAAAAACCATATTGTNA
ATAGTAGTGAATTTACATCTCCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGG
AAAGAGAGNAACAAGATTATGAAATCATTTGTAATANTGAACCAATTAAATTCANNGGCC
AAAATGAAGGATTATTGGGTAAAGATAGTATTTTATGTGGTTTTCCAAAGGNACGTATTG
ATTTATCANTATGTCAAGAATTAAANATNNAGGTTGANACNGTTTATCCATCCNTTGAAA
AGGGAACANGTATCATTTTCTGATGATAANCGTTTAGAATGTAACTCTGTNCCNGAACCA
GGTTACTNTGAATCCTCATTAATCTTTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLI
ENEIINRTXXIRXGXXXTXITXGAGXXXGXNL---

---KDNEASGSSNNNDDXNLNKNHIVNSSEFTSPSFDYHHLDELEKEREXQDYEIICNXE
PIKFXGQNEGLLGKDSILCGFPKXRIDLSXCQELXXXVXTVYPSXEKGTXIIF***xfrm
*lcxxtrll*ilinlf


Translated Amino Acid sequence (All Frames)
Frame A:
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLI
ENEIINRTXXIRXGXXXTXITXGAGXXXGXNL---

---xkimkqvvvvtimmmxi*iktilxivvnlhlhhliiii*mn*krkexnkimksfvix
nqlnsxakmkdywvkivfyvvfqrxvliyxyvkn*xxrlxxfihplkrexvsfsddxrle
cnsvpepgyxesslif

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyteiyihnlkyfkh*kktkvyqvvvvevvvvevvvi*ivlilvili*mmi*l
kmklltgqx*lexxqxihxlhxxlxxxxxkt*---

---xr**skw***q***xxfk*kpycx***iyisii*lssfr*irkgkrxtrl*nhl*x*
tn*ixxpk*riig*r*yfmwfskgty*fixmsrikxxg*xxlsix*kgnxyhflmixv*n
vtlxxnqvtxnph*sf

Frame C:
*cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfsk
nvtlwsctiqkfiftt*nisnikkkqkyik*wwwrw**wrw*lfk*y*yw*y*fk**fn*
k*ny*qdxxn*xxxxxyixyixxwxxnxxkln---

---KDNEASGSSNNNDDXNLNKNHIVNSSEFTSPSFDYHHLDELEKEREXQDYEIICNXE
PIKFXGQNEGLLGKDSILCGFPKXRIDLSXCQELXXXVXTVYPSXEKGTXIIF***xfrm
*lcxxtrll*ilinlf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFD207 (SFD207Q) /CSM/SF/SFD2-A/SFD207Q.Seq.d/ 1271 0.0
SSD242 (SSD242Q) /CSM/SS/SSD2-B/SSD242Q.Seq.d/ 646 0.0
SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/ 646 0.0
SFL131 (SFL131Q) /CSM/SF/SFL1-B/SFL131Q.Seq.d/ 646 0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/ 646 0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/ 646 0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/ 646 0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/ 646 0.0
SFD336 (SFD336Q) /CSM/SF/SFD3-B/SFD336Q.Seq.d/ 646 0.0
SFB880 (SFB880Q) /CSM/SF/SFB8-D/SFB880Q.Seq.d/ 646 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 1e-10 15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 1e-09 17
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 34 1e-08 14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 1e-08 20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 8e-08 18
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 56 1e-07 2
AC115510|AC115510.4 Rattus norvegicus clone CH230-383C9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 52 3e-07 5
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 34 1e-05 23
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 38 1e-04 8
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4. 34 1e-04 15
dna update 2003.12.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for... 36 1.8
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial... 35 2.4
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part... 35 2.4
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL... 35 2.4
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 3.1
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif... 35 3.1
(Q0VC65) RecName: Full=Transcription factor ETV6; &BC120331_1(B... 35 3.1
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien. 35 3.1
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 4.1
AK154569_1(AK154569|pid:none) Mus musculus NOD-derived CD11c +ve... 35 4.1
protein update 2009. 5.23
PSORT

psg: 0.47 gvh: 0.26 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFD207 is nuc

5' end seq. ID SFD207F
5' end seq.
>SFD207F.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGNNNTAATTAGAGNNGGNNCAANNNATACATTNATT
ACATTNGGNGCTGGNTGNNNAATNGGNNAAAACTTAAT----------
Length of 5' end seq. 458
3' end seq. ID SFD207Z
3' end seq.
>SFD207Z.Seq
----------ANAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGNNAAT
TTAAATAAAAACCATATTGTNAATAGTAGTGAATTTACATCTCCATCATTTGATTATCAT
CATTTAGATGAATTAGAAAAGGAAAGAGAGNAACAAGATTATGAAATCATTTGTAATANT
GAACCAATTAAATTCANNGGCCAAAATGAAGGATTATTGGGTAAAGATAGTATTTTATGT
GGTTTTCCAAAGGNACGTATTGATTTATCANTATGTCAAGAATTAAANATNNAGGTTGAN
ACNGTTTATCCATCCNTTGAAAAGGGAACANGTATCATTTTCTGATGATAANCGTTTAGA
ATGTAACTCTGTNCCNGAACCAGGTTACTNTGAATCCTCATTAATCTTTTC
Length of 3' end seq. 401
Connected seq. ID SFD207P
Connected seq.
>SFD207P.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATT
GAAAATGAAATTATTAACAGGACAGNNNTAATTAGAGNNGGNNCAANNNATACATTNATT
ACATTNGGNGCTGGNTGNNNAATNGGNNAAAACTTAAT----------ANAAAGATAATG
AAGCAAGTGGTAGTAGTAACAATAATGATGATGNNAATTTAAATAAAAACCATATTGTNA
ATAGTAGTGAATTTACATCTCCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGG
AAAGAGAGNAACAAGATTATGAAATCATTTGTAATANTGAACCAATTAAATTCANNGGCC
AAAATGAAGGATTATTGGGTAAAGATAGTATTTTATGTGGTTTTCCAAAGGNACGTATTG
ATTTATCANTATGTCAAGAATTAAANATNNAGGTTGANACNGTTTATCCATCCNTTGAAA
AGGGAACANGTATCATTTTCTGATGATAANCGTTTAGAATGTAACTCTGTNCCNGAACCA
GGTTACTNTGAATCCTCATTAATCTTTTC
Length of connected seq. 859
Full length Seq ID -
Full length Seq. -
Length of full length seq. -