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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD176
Library SF
(Link to library)
Clone ID SFD176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16376-1
Original site URL
Representative seq. ID SFD176P
(Link to Original site)
Representative DNA sequence 
>SFD176 (SFD176Q) /CSM/SF/SFD1-D/SFD176Q.Seq.d/
ATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTAT
TATATTCATTGGTTTTATCTGAAGAAATTAAAGATAATGAAAATGATGCTAAATCATTTG
TAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAAA
ATCAATTAGTTAGTGNAATAACATATGCATGTAGTTATAAACCAGAGAAANGTTCAATTT
ATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAAT
CTGANGAAATTGNAAAATTAANTXXXXXXXXXXANCTTNNNATGGANANAGATTATAGGG
AATNTNNNNATANANGTGNATTGNAGNANAAAGNACGTTTGGNTGCATTGGCNCTTCANC
ANCAATTGGAAAGNCANCANAATGAAGANAATCAAGAGGAATTTGATGAACTTGTACCAA
TTTTAAATGAGATTCCAGATATTCCAGTTCAAACACAACCACAACCATCTATTCCAGTTG
TTAAAACAAAACCACCTCAAACTGAACAACCACCTCAAACTAAAAAACCAACTCCTGCTC
CAACATTACCACCACCACAACCACCACAACCACAACAACCAAATACTCAATCGCCACCAG
TTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTATCAGATTATGCAAGTTACTTTG
ACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAGTATAATCAACAACATCAACAAG
ATAAAAAGGTNAAAATAATAACCAAATTNATAATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IKFLKMVFKKILFILILSLLYSLVLSEEIKDNENDAKSFVIEKVIGQIQEYANKYNLNQN
QLVSXITYACSYKPEKXSIYNNQLPENLLSTAKVILQSKSXEIXKLX---

---LXMXXDYREXXXXXXLXXKXRLXALALXXQLEXXXNEXNQEEFDELVPILNEIPDIP
VQTQPQPSIPVVKTKPPQTEQPPQTKKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKS
ESTLSDYASYFDQFLNIVDLFTQKYNQQHQQDKKVKIITKXII
Translated Amino Acid sequence (All Frames) 
Frame A:
ilnf*kwclrkyylf*yylyyihwfylkklkimkmmlnhl*lkklldkfknmqinii*ik
in*lvx*hmhvvinqrxvqfiiinylkiyyqqqk*yynqnlxklxn*---

---xxxwxxiignxxixvxxxxkxvwxhwxfxxnwkxxxmkxikrnlmnlyqf*mrfqif
qfkhnhnhlfqllkqnhlklnnhlklknqlllqhyhhhnhhnhnnqilnrhqlfkqihqn
lrvlyqimqvtltns*isliyslksiinninkikrxk**pnx*y

Frame B:
y*iskngv*eniiyfniifiifigfi*rn*r**k*c*iicn*ksywtnsrick*i*fksk
sis*xnnicm*l*trexfnl**sit*kfiinsksnitiki*xnxkix---

---xxxgxrl*gxxxxxxixxxxtfgcigxsxxigkxxx*rxsrgi**tctnfk*dsrys
ssnttttiyssc*nkttsn*tttsn*ktnscsnitttttttttttkysiatscsnkftki
*eyfirlckll*pilkyr*fihskv*sttstr*kgxnnnqixn

Frame C:
IKFLKMVFKKILFILILSLLYSLVLSEEIKDNENDAKSFVIEKVIGQIQEYANKYNLNQN
QLVSXITYACSYKPEKXSIYNNQLPENLLSTAKVILQSKSXEIXKLX---

---LXMXXDYREXXXXXXLXXKXRLXALALXXQLEXXXNEXNQEEFDELVPILNEIPDIP
VQTQPQPSIPVVKTKPPQTEQPPQTKKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKS
ESTLSDYASYFDQFLNIVDLFTQKYNQQHQQDKKVKIITKXII
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD176 (SFD176Q) /CSM/SF/SFD1-D/SFD176Q.Seq.d/                        805   0.0
SFG617 (SFG617Q) /CSM/SF/SFG6-A/SFG617Q.Seq.d/                        450   e-125
SFD873 (SFD873Q) /CSM/SF/SFD8-D/SFD873Q.Seq.d/                        450   e-125
SFD630 (SFD630Q) /CSM/SF/SFD6-B/SFD630Q.Seq.d/                        450   e-125
SFC501 (SFC501Q) /CSM/SF/SFC5-A/SFC501Q.Seq.d/                        450   e-125
SFA628 (SFA628Q) /CSM/SF/SFA6-B/SFA628Q.Seq.d/                        450   e-125
CHE512 (CHE512Q) /CSM/CH/CHE5-A/CHE512Q.Seq.d/                        450   e-125
CHD805 (CHD805Q) /CSM/CH/CHD8-A/CHD805Q.Seq.d/                        450   e-125
CHD242 (CHD242Q) /CSM/CH/CHD2-B/CHD242Q.Seq.d/                        450   e-125
CHB715 (CHB715Q) /CSM/CH/CHB7-A/CHB715Q.Seq.d/                        450   e-125
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   440   0.0    14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   1e-07  17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   1e-05  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   2e-05  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   3e-05  18
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             44   4e-05  21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   7e-05  13
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34   9e-05  14
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   3e-04  13
AC145273|AC145273.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0055E23, complete sequence.    36   0.001  8
dna update 2003.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_69(AC116986|pid:none) Dictyostelium discoideum chromoso...   160   4e-38
CP000728_3040(CP000728|pid:none) Clostridium botulinum F str. La...    36   1.3
BC064486_1(BC064486|pid:none) Homo sapiens programmed cell death...    33   8.2
(Q14690) RecName: Full=Protein RRP5 homolog; AltName: Full=Progr...    33   8.2
BC049838_1(BC049838|pid:none) Homo sapiens programmed cell death...    33   8.2
BC111040_1(BC111040|pid:none) Homo sapiens programmed cell death...    33   8.2
protein update 2009. 1. 7
PSORT 

 psg: 0.98  gvh: 0.81  alm: 0.53  top: 0.00  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear

>> prediction for SFD176 is exc
5' end seq. ID SFD176F
5' end seq. 
>SFD176F.Seq
ATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTAT
TATATTCATTGGTTTTATCTGAAGAAATTAAAGATAATGAAAATGATGCTAAATCATTTG
TAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAAA
ATCAATTAGTTAGTGNAATAACATATGCATGTAGTTATAAACCAGAGAAANGTTCAATTT
ATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAAT
CTGANGAAATTGNAAAATTAANT----------
Length of 5' end seq. 323
3' end seq. ID SFD176Z
3' end seq. 
>SFD176Z.Seq
----------ANCTTNNNATGGANANAGATTATAGGGAATNTNNNNATANANGTGNATTG
NAGNANAAAGNACGTTTGGNTGCATTGGCNCTTCANCANCAATTGGAAAGNCANCANAAT
GAAGANAATCAAGAGGAATTTGATGAACTTGTACCAATTTTAAATGAGATTCCAGATATT
CCAGTTCAAACACAACCACAACCATCTATTCCAGTTGTTAAAACAAAACCACCTCAAACT
GAACAACCACCTCAAACTAAAAAACCAACTCCTGCTCCAACATTACCACCACCACAACCA
CCACAACCACAACAACCAAATACTCAATCGCCACCAGTTGTTCAAACAAATTCACCAAAA
TCTGAGAGTACTTTATCAGATTATGCAAGTTACTTTGACCAATTCTTAAATATCGTTGAT
TTATTCACTCAAAAGTATAATCAACAACATCAACAAGATAAAAAGGTNAAAATAATAACC
AAATTNATAATAT
Length of 3' end seq. 483
Connected seq. ID SFD176P
Connected seq. 
>SFD176P.Seq
ATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTAT
TATATTCATTGGTTTTATCTGAAGAAATTAAAGATAATGAAAATGATGCTAAATCATTTG
TAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAAA
ATCAATTAGTTAGTGNAATAACATATGCATGTAGTTATAAACCAGAGAAANGTTCAATTT
ATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAAT
CTGANGAAATTGNAAAATTAANT----------ANCTTNNNATGGANANAGATTATAGGG
AATNTNNNNATANANGTGNATTGNAGNANAAAGNACGTTTGGNTGCATTGGCNCTTCANC
ANCAATTGGAAAGNCANCANAATGAAGANAATCAAGAGGAATTTGATGAACTTGTACCAA
TTTTAAATGAGATTCCAGATATTCCAGTTCAAACACAACCACAACCATCTATTCCAGTTG
TTAAAACAAAACCACCTCAAACTGAACAACCACCTCAAACTAAAAAACCAACTCCTGCTC
CAACATTACCACCACCACAACCACCACAACCACAACAACCAAATACTCAATCGCCACCAG
TTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTATCAGATTATGCAAGTTACTTTG
ACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAGTATAATCAACAACATCAACAAG
ATAAAAAGGTNAAAATAATAACCAAATTNATAATAT
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -