SFD122
Library SF
(Link to library)
Clone ID SFD122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16412-1
Original site URL
Representative seq. ID SFD122P
(Link to Original site)
Representative DNA sequence
>SFD122 (SFD122Q) /CSM/SF/SFD1-A/SFD122Q.Seq.d/
CAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAA
TTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAAN
TGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGXXXXXXXXXXTGT
GGATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAAAAGGTGAATTCCC
ANAGGCAATCAAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGGACCACACAATNTA
TAGCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGC
CGATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTAGAAAAGGTACTGC
CTTATTCGCAATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAAT
TGAAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAA
ATTACAAAGTACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAAT
TCAAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATATGTCTGAAAATCC
TGCTGCTGCTCAAGATCATCTTAAAAATCCATTAATTATGGCTAAATTCCAAAAATTAGT
TAATGCTGGTATAGTTAAATTAGGTTAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
ASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKXGRFEEAEKSAEAGLK---

---VDQSIIEKNKGVEHFKKGEFPXAIKCFEEAIRRNPKDHTXYSNRSAAYSKLLEYKLA
IKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVA
ALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQILKDMSENPAAAQDHLKNPLIMAKF
QKLVNAGIVKLG*


Translated Amino Acid sequence (All Frames)
Frame A:
qhhylh*irmkmh*qmqrkqln*nqigqkvi*ekpmhsixwvvskkqrnqqrlv*---

---cgsinh*ke*rc*tl*kr*ipxgnqmfrggnss*skgphnx*qsfrsl*qivri*ig
nqgcr*myriganihqrlh*kryclirnervstsfggl*srfkn*sqqs*tlgslkkdcr
rsh*itkyshr*rtsstscqrsrnskdsl*snhesnlkryv*kscccsrss*ksinyg*i
pkis*cwys*irl

Frame B:
siitcir*e*rcinrckesn*ietrlvkrlfkrnqctl*xgsfrrsreisrgwfk---

---VDQSIIEKNKGVEHFKKGEFPXAIKCFEEAIRRNPKDHTXYSNRSAAYSKLLEYKLA
IKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVA
ALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQILKDMSENPAAAQDHLKNPLIMAKF
QKLVNAGIVKLG*

Frame C:
ASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKXGRFEEAEKSAEAGLK---

---winqslkrikvlntlkkvnsxrqsnvsrrqfvviqrttqxiaivpqpianc*ninwq
srmpinvsnwsqhsskvtlekvlpysq*esinklwrsmikv*elkptilnswisqerlsp
lslnykvlspmknvfnklpkiqkfkrfsliqs*iks*kiclkillllkiilkih*lwlns
kn*lmlv*ln*vk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFD122 (SFD122Q) /CSM/SF/SFD1-A/SFD122Q.Seq.d/ 1407 0.0
AFH489 (AFH489Q) /CSM/AF/AFH4-D/AFH489Q.Seq.d/ 1122 0.0
AFG635 (AFG635Q) /CSM/AF/AFG6-B/AFG635Q.Seq.d/ 1122 0.0
SFG279 (SFG279Q) /CSM/SF/SFG2-D/SFG279Q.Seq.d/ 1116 0.0
SFC208 (SFC208Q) /CSM/SF/SFC2-A/SFC208Q.Seq.d/ 1116 0.0
SFB592 (SFB592Q) /CSM/SF/SFB5-D/SFB592Q.Seq.d/ 1116 0.0
SFB209 (SFB209Q) /CSM/SF/SFB2-A/SFB209Q.Seq.d/ 1114 0.0
AFH709 (AFH709Q) /CSM/AF/AFH7-A/AFH709Q.Seq.d/ 1110 0.0
SFE324 (SFE324Q) /CSM/SF/SFE3-A/SFE324Q.Seq.d/ 1106 0.0
AFH214 (AFH214Q) /CSM/AF/AFH2-A/AFH214Q.Seq.d/ 1106 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH131424|BH131424.1 ENTPC18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, genomic survey sequence. 48 7e-04 2
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 34 0.033 11
BQ416054|BQ416054.1 GA__Ed0106D05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106D05r, mRNA sequence. 44 0.097 2
AZ682362|AZ682362.1 ENTIS70TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.18 1
BT005735|0 32 0.78 3
AC145613|AC145613.1 Homo sapiens chromosome UNK clone RP11-1266H24, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 36 1.1 8
AC118391|AC118391.4 Rattus norvegicus clone CH230-84I10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 32 1.3 2
AC122648|AC122648.4 Rattus norvegicus clone CH230-46C1, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 32 1.3 2
AC103307|AC103307.7 Rattus norvegicus clone CH230-83C13, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 32 1.3 2
AC095638|AC095638.6 Rattus norvegicus clone CH230-8K6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 40 1.9 6
dna update 2003.12.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54DA8) RecName: Full=Protein STIP1 homolog; 367 e-100
EF147519_1(EF147519|pid:none) Populus trichocarpa clone WS0123_C... 195 1e-48
FB910851_1(FB910851|pid:none) Sequence 130124 from Patent WO2008... 194 2e-48
AP008210_1442(AP008210|pid:none) Oryza sativa (japonica cultivar... 193 4e-48
U89984_1(U89984|pid:none) Acanthamoeba castellanii transformatio... 192 1e-47
BT039771_1(BT039771|pid:none) Zea mays full-length cDNA clone ZM... 191 2e-47
BT015924_1(BT015924|pid:none) Arabidopsis thaliana At1g62740 gen... 191 2e-47
AK228637_1(AK228637|pid:none) Arabidopsis thaliana mRNA for TPR-... 191 2e-47
FB910833_1(FB910833|pid:none) Sequence 130106 from Patent WO2008... 190 3e-47
FB910853_1(FB910853|pid:none) Sequence 130126 from Patent WO2008... 190 3e-47
protein update 2009. 5.23
PSORT

psg: 0.75 gvh: 0.33 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
24.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SFD122 is cyt

5' end seq. ID SFD122F
5' end seq.
>SFD122F.Seq
CAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAA
TTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAAN
TGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAG----------
Length of 5' end seq. 167
3' end seq. ID SFD122Z
3' end seq.
>SFD122Z.Seq
----------TGTGGATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAA
AAGGTGAATTCCCANAGGCAATCAAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGG
ACCACACAATNTATAGCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGG
CAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTA
GAAAAGGTACTGCCTTATTCGCAATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATC
AAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCG
CCGCTCTCACTAAATTACAAAGTACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCA
AAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATA
TGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAATCCATTAATTATGGCTAAAT
TCCAAAAATTAGTTAATGCTGGTATAGTTAAATTAGGTTAAA
Length of 3' end seq. 572
Connected seq. ID SFD122P
Connected seq.
>SFD122P.Seq
CAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAA
TTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAAN
TGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAG----------TGT
GGATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAAAAGGTGAATTCCC
ANAGGCAATCAAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGGACCACACAATNTA
TAGCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGC
CGATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTAGAAAAGGTACTGC
CTTATTCGCAATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAAT
TGAAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAA
ATTACAAAGTACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAAT
TCAAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATATGTCTGAAAATCC
TGCTGCTGCTCAAGATCATCTTAAAAATCCATTAATTATGGCTAAATTCCAAAAATTAGT
TAATGCTGGTATAGTTAAATTAGGTTAAA
Length of connected seq. 739
Full length Seq ID -
Full length Seq. -
Length of full length seq. -