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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFI105
Library AF
(Link to library)
Clone ID AFI105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10692-1
Original site URL
Representative seq. ID AFI105P
(Link to Original site)
Representative DNA sequence 
>AFI105 (AFI105Q) /CSM/AF/AFI1-A/AFI105Q.Seq.d/
AAATTTATTGATAAAAAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCA
ATTAATTTAAGAGGTAAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCT
CCAAATAATAGNGGNGGNGGNGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTA
AAATTATTAAAAAACCAAGAAACTGGATTAATTGAATTTGAAAGNGATAAATTCTTTCCA
ATTGATACAAATAATAATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAA
GATTCAGATGGTAAAATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATAT
TTTAATGGTACAAATTTAAATGAAGAGTTTXXXXXXXXXXTNTTNNTNNNNNAANANNNN
NTNNNNNNNNNNNNANANNNANANANANATNNNTNTNNANNNNNNTGATNAATGNTTNAA
TNNTTTANAGTGTNATNCAANNNNTGGTNNNTTTNAAGCAATAGGTGANNCAATNNNATG
TAATGGTNAATGTCANNNTGGTGTTTGTTCAAATAGNACNTGCATTGAAAAAGATTCNNA
ATTCTGTTNCAAAGAANTAAATGATAATGATCCNAATAAATCTTTCNTTTGTGATCCAAA
TATTGGTTGTAGGGCATCAATTATTANAACATCTAAACCAACTCCAACTCCAACACCAAC
ATTAACACCAACACCCACACCAACACCCAAANCAACATCAACACCCAAACCAACATCAAA
ACCAACATCCACACCTACACCAACACCCAAACAAACAAAGAGTCCACCACCATGTGATGG
TATAATATGTAAAACAAAATATGTTTTTAAAAAGGTTTGGAATACTTTATTTAATTAAAA
AAATAAAAATAAAAATAAAAATAAAAATNGAAATAAAATAAAT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
KFIDKKLRIPVLSNLDPSSPINLRGKVINPDLFQYFFRKSPNNXGGGEKSGKNFEIKLKL
KLLKNQETGLIEFEXDKFFPIDTNNNLTLSIPTNSIKSYKDSDGKIHNYHFCLKFNNKLY
FNGTNLNEEF---

---XXXXXXXXXXXXXXXXXXXXXXDXXXNXLXCXXXXGXFXAIGXXXXCNGXCXXGVCS
NXTCIEKDSXFCXKEXNDNDPNKSFXCDPNIGCRASIIXTSKPTPTPTPTLTPTPTPTPK
XTSTPKPTSKPTSTPTPTPKQTKSPPPCDGIICKTKYVFKKVWNTLFN*knknknknknx
nkin
Translated Amino Acid sequence (All Frames) 
Frame A:
KFIDKKLRIPVLSNLDPSSPINLRGKVINPDLFQYFFRKSPNNXGGGEKSGKNFEIKLKL
KLLKNQETGLIEFEXDKFFPIDTNNNLTLSIPTNSIKSYKDSDGKIHNYHFCLKFNNKLY
FNGTNLNEEF---

---XXXXXXXXXXXXXXXXXXXXXXDXXXNXLXCXXXXGXFXAIGXXXXCNGXCXXGVCS
NXTCIEKDSXFCXKEXNDNDPNKSFXCDPNIGCRASIIXTSKPTPTPTPTLTPTPTPTPK
XTSTPKPTSKPTSTPTPTPKQTKSPPPCDGIICKTKYVFKKVWNTLFN*knknknknknx
nkin

Frame B:
nllikn*efqfyqi*ihhhqli*evkl*iliyfnislenlqiixxxxknqvktlkln*n*
ny*ktkkld*lnlkxinsfqliqiii*hyqfqqiq*nlikiqmvkyiiiifv*nliinyi
lmvqi*mks---

---xxxxxxxxxxxxxxxxxxxxxxxnxxxxxsvxqxxvxxkq*vxqxxvmvnvxxvfvq
ixxalkkixnsvxkx*mimixinlsfviqilvvghqllxhlnqlqlqhqh*hqhphqhpx
qhqhpnqhqnqhphlhqhpnkqrvhhhvmv*yvkqnmflkrfgilylikkikikikikxe
ik*

Frame C:
iy**kienssfiksrsiitn*fkr*syks*fisifl*kisk**xxxxkir*kl*n*ikik
iikkprnwin*i*kx*ilsn*yk**fniinsnkfnkil*rfrw*nt*lsflfki***iif
*wykfk*rv---

---xxxxxxxxxxxxxxxxxxxxx*xmxxxfxvxxxxwxxxsnr*xnxm*wxmsxwclfk
*xxh*krfxilxqrxk***sx*ifxl*skywl*ginyxni*tnsnsntnintnthtntqx
nintqtniktnihtytntqtnkesttm*wynm*nkicf*kgleyfi*lkk*k*k*k*kxk
*nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE559 (SSE559Q) /CSM/SS/SSE5-C/SSE559Q.Seq.d/                        272   9e-72
AFI105 (AFI105Q) /CSM/AF/AFI1-A/AFI105Q.Seq.d/                        272   9e-72
AFO126 (AFO126Q) /CSM/AF/AFO1-B/AFO126Q.Seq.d/                        264   2e-69
SFE525 (SFE525Q) /CSM/SF/SFE5-B/SFE525Q.Seq.d/                        260   3e-68
AFO627 (AFO627Q) /CSM/AF/AFO6-B/AFO627Q.Seq.d/                        260   3e-68
AFN730 (AFN730Q) /CSM/AF/AFN7-B/AFN730Q.Seq.d/                        260   3e-68
AFN429 (AFN429Q) /CSM/AF/AFN4-B/AFN429Q.Seq.d/                        260   3e-68
AFL667 (AFL667Q) /CSM/AF/AFL6-C/AFL667Q.Seq.d/                        260   3e-68
AFG490 (AFG490Q) /CSM/AF/AFG4-D/AFG490Q.Seq.d/                        260   3e-68
AFG467 (AFG467Q) /CSM/AF/AFG4-C/AFG467Q.Seq.d/                        260   3e-68
own update 2009. 4. 3
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U41165|U41165.1 Human recombination 'hot spot' region associated with the CMT1A duplication and the HNPP deletion containing a mariner transposon-like element.    38  0.18  3
AL513494|AL513494.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP13-420K18.    48  0.19  1
AC002071|AC002071.1 Human PAC clone RP1-2C6 from Xq23, complete sequence.    48  0.19  1
L44119|L44119.1 Homo sapiens distal CMT1A-REP repeat.             38  0.33  3
AC074131|AC074131.3 Homo sapiens chromosome 5 clone CTD-2232E5, complete sequence.    36  0.63  4
AC108117|AC108117.2 Homo sapiens chromosome 5 clone RP11-348K15, complete sequence.    36  0.72  3
BX511059|BX511059.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-253P10.    44  1.2  4
AC090086|AC090086.1 Homo sapiens chromosome 8 clone CTD-3218L16 map 8, WORKING DRAFT SEQUENCE, 31 unordered pieces.    38  1.7  4
AL954359|AL954359.5 Zebrafish DNA sequence from clone CH211-270N8.    44  2.7  2
BX511142|BX511142.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-69B22.    44  2.7  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...    63   2e-08
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 58   5e-07
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    57   1e-06
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    54   9e-06
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                 48   4e-04
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 44   0.006
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 42   0.022
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    42   0.022
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 36   2.0
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 35   2.7
protein update 2008.11. 8
PSORT 

 psg: 0.73  gvh: 0.45  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for AFI105 is cyt
5' end seq. ID AFI105F
5' end seq. 
>AFI105F.Seq
AAATTTATTGATAAAAAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCA
ATTAATTTAAGAGGTAAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCT
CCAAATAATAGNGGNGGNGGNGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTA
AAATTATTAAAAAACCAAGAAACTGGATTAATTGAATTTGAAAGNGATAAATTCTTTCCA
ATTGATACAAATAATAATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAA
GATTCAGATGGTAAAATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATAT
TTTAATGGTACAAATTTAAATGAAGAGTTT----------
Length of 5' end seq. 390
3' end seq. ID AFI105Z
3' end seq. 
>AFI105Z.Seq
----------TNTTNNTNNNNNAANANNNNNTNNNNNNNNNNNNANANNNANANANANAT
NNNTNTNNANNNNNNTGATNAATGNTTNAATNNTTTANAGTGTNATNCAANNNNTGGTNN
NTTTNAAGCAATAGGTGANNCAATNNNATGTAATGGTNAATGTCANNNTGGTGTTTGTTC
AAATAGNACNTGCATTGAAAAAGATTCNNAATTCTGTTNCAAAGAANTAAATGATAATGA
TCCNAATAAATCTTTCNTTTGTGATCCAAATATTGGTTGTAGGGCATCAATTATTANAAC
ATCTAAACCAACTCCAACTCCAACACCAACATTAACACCAACACCCACACCAACACCCAA
ANCAACATCAACACCCAAACCAACATCAAAACCAACATCCACACCTACACCAACACCCAA
ACAAACAAAGAGTCCACCACCATGTGATGGTATAATATGTAAAACAAAATATGTTTTTAA
AAAGGTTTGGAATACTTTATTTAATTAAAAAAATAAAAATAAAAATAAAAATAAAAATNG
AAATAAAATAAAT
Length of 3' end seq. 543
Connected seq. ID AFI105P
Connected seq. 
>AFI105P.Seq
AAATTTATTGATAAAAAATTGAGAATTCCAGTTTTATCAAATCTAGATCCATCATCACCA
ATTAATTTAAGAGGTAAAGTTATAAATCCTGATTTATTTCAATATTTCTTTAGAAAATCT
CCAAATAATAGNGGNGGNGGNGAAAAATCAGGTAAAAACTTTGAAATTAAATTAAAATTA
AAATTATTAAAAAACCAAGAAACTGGATTAATTGAATTTGAAAGNGATAAATTCTTTCCA
ATTGATACAAATAATAATTTAACATTATCAATTCCAACAAATTCAATAAAATCTTATAAA
GATTCAGATGGTAAAATACATAATTATCATTTTTGTTTAAAATTTAATAATAAATTATAT
TTTAATGGTACAAATTTAAATGAAGAGTTT----------TNTTNNTNNNNNAANANNNN
NTNNNNNNNNNNNNANANNNANANANANATNNNTNTNNANNNNNNTGATNAATGNTTNAA
TNNTTTANAGTGTNATNCAANNNNTGGTNNNTTTNAAGCAATAGGTGANNCAATNNNATG
TAATGGTNAATGTCANNNTGGTGTTTGTTCAAATAGNACNTGCATTGAAAAAGATTCNNA
ATTCTGTTNCAAAGAANTAAATGATAATGATCCNAATAAATCTTTCNTTTGTGATCCAAA
TATTGGTTGTAGGGCATCAATTATTANAACATCTAAACCAACTCCAACTCCAACACCAAC
ATTAACACCAACACCCACACCAACACCCAAANCAACATCAACACCCAAACCAACATCAAA
ACCAACATCCACACCTACACCAACACCCAAACAAACAAAGAGTCCACCACCATGTGATGG
TATAATATGTAAAACAAAATATGTTTTTAAAAAGGTTTGGAATACTTTATTTAATTAAAA
AAATAAAAATAAAAATAAAAATAAAAATNGAAATAAAATAAAT
Length of connected seq. 933
Full length Seq ID -
Full length Seq. -
Length of full length seq. -