AFA160
Library AF
(Link to library)
Clone ID AFA160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16520-1
Original site URL
Representative seq. ID AFA160Z
(Link to Original site)
Representative DNA sequence
>AFA160 (AFA160Q) /CSM/AF/AFA1-C/AFA160Q.Seq.d/
XXXXXXXXXXATGCTGTTGGTACCAAACGTTATGATTCTCAATCTGGTGGTGAACGTGAA
ATTCAAAGAACTATGTTGGAACTCTTGAATCAATTGGATGGTTTCGATGCTAGAACCGAT
GTAAAAGTTATCATGGCTACAAATCGTATTGAAACTTTAGATCCTGCTCTCATTCGTCCA
GGTCGTATCGATCGTAAAATTGAATTCCCTCTTCCAGATATTAAGACCAAGAGAAAGATC
TTTGAAATTCATACTGCTAACAATGANTTCTNCGCTGAAGATGTTAACCTTGAAGAGTTT
GTTATGTCTAAAGATGNTTTATCCGGTGCTGNTATCAAAGCCATCTGTACTGAATACTGG
TNCNTTTAGCACNCAGAGCNACGTAGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---AVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPG
RIDRKIEFPLPDIKTKRKIFEIHTANNXFXAEDVNLEEFVMSKDXLSGAXIKAICTEYWX
X*hxexrr


Translated Amino Acid sequence (All Frames)
Frame A:
---ccwyqtl*fsiww*t*nsknyvgtlesigwfrc*nrcksyhgyksy*nfrscshssr
syrs*n*ipssry*dqekdl*nsyc*q*xlr*rc*p*rvcyv*rxfircxyqshly*ilv
xlaxrat*


Frame B:
---AVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPG
RIDRKIEFPLPDIKTKRKIFEIHTANNXFXAEDVNLEEFVMSKDXLSGAXIKAICTEYWX
X*hxexrr


Frame C:
---llvpnvmilnlvvnvkfkelcwns*inwmvsmlepm*klswlqivlkl*illsfvqv
vsivklnslfqilrprerslkfilltmxsxlkmltlksllclkmxypvlxskpsvlntgx
fstqsxve


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFA160 (AFA160Q) /CSM/AF/AFA1-C/AFA160Q.Seq.d/ 702 0.0
SLB640 (SLB640Q) /CSM/SL/SLB6-B/SLB640Q.Seq.d/ 613 e-175
SFH857 (SFH857Q) /CSM/SF/SFH8-C/SFH857Q.Seq.d/ 613 e-175
AFN319 (AFN319Q) /CSM/AF/AFN3-A/AFN319Q.Seq.d/ 613 e-175
AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/ 585 e-166
FC-AJ15 (FC-AJ15Q) /CSM/FC/FC-AJ/FC-AJ15Q.Seq.d/ 470 e-132
AFH216 (AFH216Q) /CSM/AF/AFH2-A/AFH216Q.Seq.d/ 387 e-107
AFD164 (AFD164Q) /CSM/AF/AFD1-C/AFD164Q.Seq.d/ 377 e-104
VFB722 (VFB722Q) /CSM/VF/VFB7-A/VFB722Q.Seq.d/ 367 e-101
SFE651 (SFE651Q) /CSM/SF/SFE6-C/SFE651Q.Seq.d/ 367 e-101

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI741860|BI741860.1 kt81h06.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:PRS4_CAEEL O16368 PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4. [1] ;, mRNA sequence. 113 2e-36 3
BF046998|BF046998.1 EST1095 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaI6E10 5' similar to 26S protease regulatory subunit 4 of D. melanogaster, mRNA sequence. 145 5e-31 1
AL115143|AL115143.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 86 2e-23 3
BM959240|BM959240.1 PLATE_12_C11_05.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence. 64 9e-22 3
BM959492|BM959492.1 PLATE_9_C08_06.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence. 64 1e-21 3
BP120902|BP120902.1 Bombyx mori cDNA, clone:ceN-3859. 113 2e-21 1
CB404685|CB404685.1 OSTR026H8_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 82 2e-21 2
BJ132123|BJ132123.1 Caenorhabditis elegans cDNA clone:yk1062d09 : 3' end, single read. 82 3e-21 2
BQ477137|BQ477137.1 meladema3d09.g Meladema coriacea cDNA Meladema coriacea cDNA clone meladema3d09 3', mRNA sequence. 78 1e-20 2
BP119878|BP119878.1 Bombyx mori cDNA, clone:ceN-1456. 107 1e-19 1
dna update 2003. 7.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY809862_1(AY809862|pid:none) Schistosoma japonicum SJCHGC04980 ... 187 7e-47
AY087584_1(AY087584|pid:none) Arabidopsis thaliana clone 36815 m... 187 1e-46
AC006081_7(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ... 187 1e-46
DQ440313_1(DQ440313|pid:none) Aedes aegypti clone AET-397 26S pr... 186 2e-46
BT054998_1(BT054998|pid:none) Zea mays full-length cDNA clone ZM... 186 2e-46
AB037154_1(AB037154|pid:none) Oryza sativa Japonica Group OsRPT2... 186 3e-46
FB781850_1(FB781850|pid:none) Sequence 1123 from Patent WO200803... 186 3e-46
(P48601) RecName: Full=26S protease regulatory subunit 4; AltNam... 186 3e-46
D17789_1(D17789|pid:none) Oryza sativa Japonica Group mRNA for h... 186 3e-46
AF123391_1(AF123391|pid:none) Arabidopsis thaliana 26S proteasom... 186 3e-46
protein update 2009. 3.25
PSORT

psg: 0.45 gvh: 0.39 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.02
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for AFA160 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFA160Z
3' end seq.
>AFA160Z.Seq
----------ATGCTGTTGGTACCAAACGTTATGATTCTCAATCTGGTGGTGAACGTGAA
ATTCAAAGAACTATGTTGGAACTCTTGAATCAATTGGATGGTTTCGATGCTAGAACCGAT
GTAAAAGTTATCATGGCTACAAATCGTATTGAAACTTTAGATCCTGCTCTCATTCGTCCA
GGTCGTATCGATCGTAAAATTGAATTCCCTCTTCCAGATATTAAGACCAAGAGAAAGATC
TTTGAAATTCATACTGCTAACAATGANTTCTNCGCTGAAGATGTTAACCTTGAAGAGTTT
GTTATGTCTAAAGATGNTTTATCCGGTGCTGNTATCAAAGCCATCTGTACTGAATACTGG
TNCNTTTAGCACNCAGAGCNACGTAGAA
Length of 3' end seq. 378
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -