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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC816
Library SF
(Link to library)
Clone ID SFC816
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15568-1|Contig-U15856-1
Original site URL
Representative seq. ID SFC816P
(Link to Original site)
Representative DNA sequence 
>SFC816 (SFC816Q) /CSM/SF/SFC8-A/SFC816Q.Seq.d/
GTCTCACAAAATTTTATATGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATC
GTCACAATTATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAAC
CTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTAC
AAGCTGCACAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACACCCACAACTCTTCATTCANC
AACAAGCATTATTACAGCAACAACAACTACAACAACAACAACAACAACAGCAACAACAAC
AACAACATCAACAACAACAXXXXXXXXXXCNNCNNCAAATTCANCNCAATTCCAACAACA
TCAACATCATCATCAGCACCAACAACACCAACACCAACAGCAACAACAGCAACAACAACA
ATATCAACAACATAATCAAAACCAACAACATAATCAAAACCAACAACATAATCAAAGCCA
ACATAATCAAAACCAACAAAATCAGTCATATCCATTCGATCCACAGTATTATTTACAAAG
ATCAACCCAACAACAAACACAATCACCTCCTGCACATTTAAATTACCAGTCACCACAGTA
TTATAATCAACAAAAACAGGAGGGTTTAGGTATTATTAACAACAAAGAAGGATAATTAAC
AATCAGGCCAACCATTTTTGAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
VSQNFICNNLGNNNNFNNKIVTIIKMNKIIRNNNNNNNINLYNHHQSYPKTINNHHFKLY
KLHKLFNRCNQCTNNNNNNNNNNNNNNNNNNNNTHNSSFXNKHYYSNNNYNNNNNNSNNN
NNINNN---

---XXNSXQFQQHQHHHQHQQHQHQQQQQQQQQYQQHNQNQQHNQNQQHNQSQHNQNQQN
QSYPFDPQYYLQRSTQQQTQSPPAHLNYQSPQYYNQQKQEGLGIINNKEG*ltirptife
t
Translated Amino Acid sequence (All Frames) 
Frame A:
VSQNFICNNLGNNNNFNNKIVTIIKMNKIIRNNNNNNNINLYNHHQSYPKTINNHHFKLY
KLHKLFNRCNQCTNNNNNNNNNNNNNNNNNNNNTHNSSFXNKHYYSNNNYNNNNNNSNNN
NNINNN---

---xxqixxnsnniniiistnntntnsnnsnnnninniiktnniiktnniikaniiktnk
ishihsihsiiykdqpnnkhnhllhi*itshhsiiinknrrv*vllttkkdn*qsgqpfl
k

Frame B:
shkilyati*gtttisttkssqlsk*tr*fattttttistfttttshtpklsttitsnst
sctsysidainapttttttttttttttttttttpttlhsxtsiitattttttttttattt
ttsttt---

---xxkfxxipttstsssapttptptattatttistt*skptt*skptt*skpt*skptk
svisirstvlftkinpttntitsctfklpvttvl*stktggfryy*qqrriinnqanhf*
n

Frame C:
ltkfymqqfreqqqfqqqnrhnyqneqdnsqqqqqqqyqplqpppvipqnyqqpslqtlq
aaqaiqsmqsmhqqqqqqqqqqqqqqqqqqqqhpqlfixqqallqqqqlqqqqqqqqqqq
qhqqq---

---XXNSXQFQQHQHHHQHQQHQHQQQQQQQQQYQQHNQNQQHNQNQQHNQSQHNQNQQN
QSYPFDPQYYLQRSTQQQTQSPPAHLNYQSPQYYNQQKQEGLGIINNKEG*ltirptife
t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC816 (SFC816Q) /CSM/SF/SFC8-A/SFC816Q.Seq.d/                        367   e-100
AFD511 (AFD511Q) /CSM/AF/AFD5-A/AFD511Q.Seq.d/                        345   6e-94
VFE854 (VFE854Q) /CSM/VF/VFE8-C/VFE854Q.Seq.d/                        339   4e-92
SFE162 (SFE162Q) /CSM/SF/SFE1-C/SFE162Q.Seq.d/                        337   1e-91
AFJ660 (AFJ660Q) /CSM/AF/AFJ6-C/AFJ660Q.Seq.d/                        329   4e-89
AFE350 (AFE350Q) /CSM/AF/AFE3-C/AFE350Q.Seq.d/                        319   3e-86
CFB820 (CFB820Q) /CSM/CF/CFB8-A/CFB820Q.Seq.d/                        317   1e-85
SLD862 (SLD862Q) /CSM/SL/SLD8-C/SLD862Q.Seq.d/                        276   5e-73
AFO308 (AFO308Q) /CSM/AF/AFO3-A/AFO308Q.Seq.d/                        208   9e-53
AFJ756 (AFJ756Q) /CSM/AF/AFJ7-C/AFJ756Q.Seq.d/                        208   9e-53
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    40   0.002  4
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    38   0.025  4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42   0.043  7
AC126997|AC126997.4 Rattus norvegicus clone CH230-43K12, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50   0.044  1
BM882566|BM882566.1 rb03b08.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    44   0.078  2
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   0.087  6
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   0.12   6
AZ687894|AZ687894.1 ENTKX16TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.17   1
BM094322|BM094322.1 saj14a08.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2703 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence.    48   0.17   1
BG046482|BG046482.1 saa54g06.y1 Gm-c1060 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1060-684 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence.    48   0.17   1
dna update 2003.12.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 396,711,547
protein update 2009. 5.22
PSORT 

 psg: 0.74  gvh: 0.14  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.53  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SFC816 is mit
5' end seq. ID SFC816F
5' end seq. 
>SFC816F.Seq
GTCTCACAAAATTTTATATGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATC
GTCACAATTATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAAC
CTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTAC
AAGCTGCACAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACACCCACAACTCTTCATTCANC
AACAAGCATTATTACAGCAACAACAACTACAACAACAACAACAACAACAGCAACAACAAC
AACAACATCAACAACAACA----------
Length of 5' end seq. 379
3' end seq. ID SFC816Z
3' end seq. 
>SFC816Z.Seq
----------CNNCNNCAAATTCANCNCAATTCCAACAACATCAACATCATCATCAGCAC
CAACAACACCAACACCAACAGCAACAACAGCAACAACAACAATATCAACAACATAATCAA
AACCAACAACATAATCAAAACCAACAACATAATCAAAGCCAACATAATCAAAACCAACAA
AATCAGTCATATCCATTCGATCCACAGTATTATTTACAAAGATCAACCCAACAACAAACA
CAATCACCTCCTGCACATTTAAATTACCAGTCACCACAGTATTATAATCAACAAAAACAG
GAGGGTTTAGGTATTATTAACAACAAAGAAGGATAATTAACAATCAGGCCAACCATTTTT
GAAACT
Length of 3' end seq. 356
Connected seq. ID SFC816P
Connected seq. 
>SFC816P.Seq
GTCTCACAAAATTTTATATGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATC
GTCACAATTATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAAC
CTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTAC
AAGCTGCACAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACACCCACAACTCTTCATTCANC
AACAAGCATTATTACAGCAACAACAACTACAACAACAACAACAACAACAGCAACAACAAC
AACAACATCAACAACAACA----------CNNCNNCAAATTCANCNCAATTCCAACAACA
TCAACATCATCATCAGCACCAACAACACCAACACCAACAGCAACAACAGCAACAACAACA
ATATCAACAACATAATCAAAACCAACAACATAATCAAAACCAACAACATAATCAAAGCCA
ACATAATCAAAACCAACAAAATCAGTCATATCCATTCGATCCACAGTATTATTTACAAAG
ATCAACCCAACAACAAACACAATCACCTCCTGCACATTTAAATTACCAGTCACCACAGTA
TTATAATCAACAAAAACAGGAGGGTTTAGGTATTATTAACAACAAAGAAGGATAATTAAC
AATCAGGCCAACCATTTTTGAAACT
Length of connected seq. 735
Full length Seq ID -
Full length Seq. -
Length of full length seq. -