NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC807
Library SF
(Link to library)
Clone ID SFC807
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SFC807Z
(Link to Original site)
Representative DNA sequence 
>SFC807 (SFC807Q) /CSM/SF/SFC8-A/SFC807Q.Seq.d/
XXXXXXXXXXTTAAAGAATGCANAANNTGCTCAATTCATTGTCAATATCATTGGTGAACN
AAATGGTTGGTGGTTCAGCTCCACCACCAACTCANCCAGGTAGATCAGCTCCNCCAGCTC
CNCCATCTTCAAACCAACCAGGTAGATCAGCTCCNCCACCACCNCCATCTGTTGGTAAAA
GTGCTCCACCACCACCACCACCATCCCATAAGACACCTGCAGCTCCACCATCAGGCGGAG
GTNCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCAC
CACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAA
ATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATC
CACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAG
CTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATG
ACGATGATGAAGGTCAGATTATTAAATATTCTTAACAAAATTCAAATTCAAAAAAATCAT
TAATAAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---*RMXXXLNSLSISLVNXMVGGSAPPPTXPGRSAPPAPPSSNQPGRSAPPPPPSVGKS
APPPPPPSHKTPAAPPSGGGXPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRN
DLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDD
DDEGQIIKYS*qnsnskkslik
Translated Amino Acid sequence (All Frames) 
Frame A:
---*RMXXXLNSLSISLVNXMVGGSAPPPTXPGRSAPPAPPSSNQPGRSAPPPPPSVGKS
APPPPPPSHKTPAAPPSGGGXPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRN
DLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDD
DDEGQIIKYS*qnsnskkslik


Frame B:
---kecxxcsihcqyhw*tkwlvvqlhhqlxqvdqlxqlxhlqtnqvdqlxhhxhllvkv
lhhhhhhpirhlqlhhqaevlhhhhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveem
ifwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmt
mmkvrllnilnkiqiqknh**r


Frame C:
---knaxxaqfivniigexngwwfssttnsxr*issxssxifkptr*issxttxicw*kc
stttttip*dtcsstirrrxstttttstttf*wsttstttngqcssiirrwwcqrrwkk*
sfgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r
**rsdy*ifltkfkfkkiink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        414   e-115
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        414   e-115
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        414   e-115
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        414   e-115
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        414   e-115
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        414   e-115
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        414   e-115
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        414   e-115
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        414   e-115
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        414   e-115
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   414   0.0    6
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50   0.036  1
BQ847872|BQ847872.1 QGA5J16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGA5J16, mRNA sequence.    32   0.050  3
AC007399|AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.    40   0.49   2
AL669939|AL669939.9 Mouse DNA sequence from clone RP23-213O8 on chromosome X.    38   0.54   5
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence.    46   0.56   1
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.    46   0.56   1
AL365360|AL365360.9 Human DNA sequence from clone RP11-546N22 on chromosome 9.    44   1.7    3
AL845541|AL845541.2 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-84M21.    38   2.0    6
BM546955|BM546955.1 AGENCOURT_6491265 NIH_MGC_125 Homo sapiens cDNA clone IMAGE:5723733 5', mRNA sequence.    44   2.2    1
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    81   2e-14
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.084
protein update 2009. 1. 7
PSORT 

 psg: 0.86  gvh: 0.59  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.20
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SFC807 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC807Z
3' end seq. 
>SFC807Z.Seq
----------TTAAAGAATGCANAANNTGCTCAATTCATTGTCAATATCATTGGTGAACN
AAATGGTTGGTGGTTCAGCTCCACCACCAACTCANCCAGGTAGATCAGCTCCNCCAGCTC
CNCCATCTTCAAACCAACCAGGTAGATCAGCTCCNCCACCACCNCCATCTGTTGGTAAAA
GTGCTCCACCACCACCACCACCATCCCATAAGACACCTGCAGCTCCACCATCAGGCGGAG
GTNCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCAC
CACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAA
ATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATC
CACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAG
CTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATG
ACGATGATGAAGGTCAGATTATTAAATATTCTTAACAAAATTCAAATTCAAAAAAATCAT
TAATAAAGA
Length of 3' end seq. 599
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -