SFC806 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFC806
Library	SF (Link to library)
Clone ID	SFC806 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16471-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFC8-A/SFC806Q.Seq.d/
Representative seq. ID	SFC806E (Link to Original site)
Representative DNA sequence	>SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ TCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAA TTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTA AAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAAT GTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAAC AACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGT GCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGAT GCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATT GAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCT GCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAAT GAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAA AATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTT CAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAA AGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGT GATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAG AATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAA TTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAA AAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATATTNATCATTCTTTCTTTTN AAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	SNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENN VEEFPDLNDANDNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVED APERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAI EQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNK NLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLS DVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQE KNQQLLEQEQNQKYXSFFLXK
Translated Amino Acid sequence (All Frames)	Frame A: SNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENN VEEFPDLNDANDNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVED APERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAI EQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNK NLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLS DVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQE KNQQLLEQEQNQKYXSFFLXK Frame B: qinnnfknnklihprifniniiinhskmtiimiklknkmmiiilminkltmvnlkim lknflimmlmiilnklttttttsiiitittlklinqrkvlnklkllrmkdfifkklkm lqrdymkkfiipiikqfkrlkklkdnkmvmvhlltlirllkwemlkimklpmnkmpl nklniynvlkmvkismsmklpnmklpfmkmnkmllnykmkwtnnsylkrmkknnfqik iynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlstv mlkklnlnwmlnwlkiinkrikmrifkrnnnlltklkinkifnxnnksknnkinikk kinnynknkiknixhsffxk Frame C: ktttsrttnftrgysisiksfkstiprls*snrikr*lf*stnqwsikc risfkc*ftsqqqqqhq*qqlsikekcstsncfrektlssrsrc sretirnsfqfesssrgrnkttkwwftccklsdcnsngkck*nyqtrch* tsstfttykwryrvscptsclfrktrccitkngpirtltrerrtifkk fttt*eksttttrtttsssnkcttnrttsyqrisktrstketknstrercclle cksstigcigk*tresrefssrettispnksikkystxttnprttr*iksrk kstiirtrtkskixiilsfxk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 944 0.0 SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 944 0.0 SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 944 0.0 SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 944 0.0 CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 944 0.0 CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 944 0.0 CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/ 944 0.0 CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/ 944 0.0 CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/ 944 0.0 CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/ 944 0.0
own update	2002.10. 8
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U25143\|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 944 0.0 5 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 2e-33 16 AC115576\|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, * SEQUENCING IN PROGRESS *, in ordered pieces. 127 4e-25 1 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-14 25 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 4e-12 23 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 38 6e-12 26 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 6e-12 23 AE014820\|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 1e-11 17 AP006628\|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 34 3e-11 28 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 1e-10 21
dna update	2003.12.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 509 e-143 AF305694_1(AF305694\|pid:none) Kaposi's sarcoma-associated herpes... 52 4e-05 AF148805_82(AF148805\|pid:none) Human herpesvirus 8 type P isolat... 50 2e-04 AF192756_1(AF192756\|pid:none) Kaposi's sarcoma-associated herpes... 50 2e-04 U52064_1(U52064\|pid:none) Kaposi's sarcoma-associated herpes-lik... 49 3e-04 CR855913_1(CR855913\|pid:none) Paramecium tetraurelia macronuclea... 48 6e-04 U93872_83(U93872\|pid:none) Kaposi's sarcoma-associated herpesvir... 48 7e-04 AF360120_1(AF360120\|pid:none) Human herpesvirus 8 ORF73 gene, co... 48 7e-04 AL844504_88(AL844504\|pid:none) Plasmodium falciparum 3D7 chromos... 47 0.001 (Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase; ... 47 0.001
protein update	2009. 7. 3
PSORT	psg: 0.48 gvh: 0.14 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 32.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: plasma membrane >> prediction for SFC806 is nuc
5' end seq. ID	SFC806F
5' end seq.	>SFC806F.Seq TCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAA TTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTA AAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAAT GTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAAC AACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGT GCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGAT GCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA------- ---
Length of 5' end seq.	533
3' end seq. ID	SFC806Z
3' end seq.	>SFC806Z.Seq ----------ATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC CAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGAT AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATATTNA TCATTCTTTCTTTTNAAAAA
Length of 3' end seq.	670
Connected seq. ID	SFC806P
Connected seq.	>SFC806P.Seq TCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAA TTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTA AAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAAT GTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAAC AACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGT GCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGAT GCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA------- ---ATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA AAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAA ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATATTNATCATTCT TTCTTTTNAAAAA
Length of connected seq.	1203
Full length Seq ID	SFC806E
Full length Seq.	>SFC806E.Seq TCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAA TTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTA AAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAAT GTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAAC AACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGT GCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGAT GCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATT GAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCT GCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAAT GAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAA AATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTT CAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAA AGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGT GATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAG AATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAA TTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAA AAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATATTNATCATTCTTTCTTTTN AAAAA
Length of full length seq.	1145

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas