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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC789
Library SF
(Link to library)
Clone ID SFC789
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SFC789Z
(Link to Original site)
Representative DNA sequence 
>SFC789 (SFC789Q) /CSM/SF/SFC7-D/SFC789Q.Seq.d/
XXXXXXXXXXGNNCCACCNCCACCACCACCTCCACCANCACCTTCTAGTGGTCCACCACC
TCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGG
TGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTATAAA
CCAATCCACTCCCAGATATTCAAAGTCTGGTAATAAGGTTCACGTTCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---PPPPPPPPXPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVINQ
STPRYSKSGNKVHVL
Translated Amino Acid sequence (All Frames) 
Frame A:
---xhxhhhlhxhllvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvlrll*t
nplpdiqslvirftf


Frame B:
---xtxtttstxtf*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*gcykp
ihsqifkvw**gsrs


Frame C:
---PPPPPPPPXPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVINQ
STPRYSKSGNKVHVL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC789 (SFC789Q) /CSM/SF/SFC7-D/SFC789Q.Seq.d/                        327   4e-89
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        272   2e-72
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        272   2e-72
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        272   2e-72
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        272   2e-72
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        272   2e-72
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        272   2e-72
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        272   2e-72
SFC807 (SFC807Q) /CSM/SF/SFC8-A/SFC807Q.Seq.d/                        272   2e-72
CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/                        272   2e-72
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   220   9e-70  3
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50   0.013  1
BZ118912|BZ118912.1 CH230-523E6.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-523E6, DNA sequence.    40   0.032  2
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence.    46   0.20   1
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.    46   0.20   1
U18348|U18348.1 Phaseolus vulgaris phaseolin G-box binding protein PG1 (PG1) mRNA, complete cds.    44   0.78   1
CK286950|CK286950.1 EST749672 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMB572 3' end, mRNA sequence.    44   0.78   1
BU063337|BU063337.1 Fgr_2_P18_T3 Nitrogen-starved mycelia Gibberella zeae cDNA, mRNA sequence.    42   3.1    1
BI726794|BI726794.1 1031087E09.x1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.    42   3.1    1
BU651529|BU651529.1 1112094B01.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.    42   3.1    1
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    34   0.031
protein update 2009. 1. 7
PSORT 

 psg: 0.84  gvh: 0.42  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFC789 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC789Z
3' end seq. 
>SFC789Z.Seq
----------GNNCCACCNCCACCACCACCTCCACCANCACCTTCTAGTGGTCCACCACC
TCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGG
TGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTATAAA
CCAATCCACTCCCAGATATTCAAAGTCTGGTAATAAGGTTCACGTTCTT
Length of 3' end seq. 219
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -