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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC738
Library SF
(Link to library)
Clone ID SFC738
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID SFC738P
(Link to Original site)
Representative DNA sequence 
>SFC738 (SFC738Q) /CSM/SF/SFC7-B/SFC738Q.Seq.d/
TTCAACCGGTTGTTGCAACACTCCAATNAATGTTGATGATAATAATCCATGTACCACTGA
CTCATGTACCAAATCAGGTGGTGTAACTCATACTCCAGTCAATGTTGATGATAATAACAA
ATGTACCACAGATTCATGTACCAAAGAAGGTGGTATAACTCATACTCCAATCTCTTGTGA
TGATAATAATCCATGTACACTTGACTCATGTTCACCAACAACTGGTTGTGTAAATAAACC
AATGAATGTTGATGATAATGATGCATGTACAACCGATACATGTAATAAAGATGGTACCAT
CACTCATACACCAATCAATACAGATGATAATAACAAATGTACATTAGATGCTTGTTCACC
AAANACTGGTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAA
TAAGTTGTTCACCATCAGTTGGXXXXXXXXXXACAATCAATAGTTGTTCACCATCAGTTG
GTTGTATCTCAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAAT
GTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACCTCTGATAAATGTAATG
AAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGA
ATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTAT
GTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAAT
TCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAAAATGTGATCCAA
TTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACCTTTGTAACATTG
GTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATTGTGATGATAATA
ATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTAACAAACCATATA
ATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTG
GTACAGGAGGTAAAGGNATTGCAAAACTTGTAAAAATTAAAAACTCTTTTATTNATAATT
TAAAAAAATTCAAAAAAATTCAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
STGCCNTPXNVDDNNPCTTDSCTKSGGVTHTPVNVDDNNKCTTDSCTKEGGITHTPISCD
DNNPCTLDSCSPTTGCVNKPMNVDDNDACTTDTCNKDGTITHTPINTDDNNKCTLDACSP
XTGVTHTPINCDDGNKCTINKLFTISW---

---TINSCSPSVGCISTPVSCPKPKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGV
CTSKPISCPKPKNKCQVAKCDLIKGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPK
NKNKCIISKCDPIKGTITNSTVNCECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSC
DSKTGKCINKPYNVITSGSNLISGLIGGLIGGGTGGKGIAKLVKIKNSFIXNLKKFKKIQ
KK
Translated Amino Acid sequence (All Frames) 
Frame A:
fnrllqhsnxc****smyh*lmyqirwcnsyssqc****qmyhrfmyqrrwynsysnll*
***smyt*lmftnnwlck*tnec****cmynrym**rwyhhsytnqyr***qmyirclft
kxwcnsytnql**wkqmynq*vvhhql---

---TINSCSPSVGCISTPVSCPKPKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGV
CTSKPISCPKPKNKCQVAKCDLIKGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPK
NKNKCIISKCDPIKGTITNSTVNCECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSC
DSKTGKCINKPYNVITSGSNLISGLIGGLIGGGTGGKGIAKLVKIKNSFIXNLKKFKKIQ
KK

Frame B:
STGCCNTPXNVDDNNPCTTDSCTKSGGVTHTPVNVDDNNKCTTDSCTKEGGITHTPISCD
DNNPCTLDSCSPTTGCVNKPMNVDDNDACTTDTCNKDGTITHTPINTDDNNKCTLDACSP
XTGVTHTPINCDDGNKCTINKLFTISW---

---qsivvhhqlvvsqhqfhvqnqkinvqslnviqpkvasksq*ivplinvmkhhvvmvf
vpqnqlavqnqrisvklqnvi*lkvvpsqm*yvmmvmlvpkihvvqtlvnvnsnqsnfqr
iktnvsfqnviqlkvqsptvp*tvnvmtfvtlvnvvkiqenvitdkkivmiiiqkqliva
iprlvnvltnhimlsqvvli*slv*lvvslvvvqevkxlqnl*klktllxii*knskkfk
kk

Frame C:
qpvvatlqxmlmiiihvplthvpnqvv*lilqsmlmiitnvpqihvpkkvv*lilqslvm
iiihvhlthvhqqlvv*inq*mlmimmhvqpihvikmvpslihqsiqmiitnvh*mlvhq
xlv*lihqsivmmetnvqsiscspsv---

---nq*lftiswlylntsfmsktkr*mfnlsm*fsqrlhrspnelyl**m**siml*wcl
ylktn*lsktke*vssckm*fn*rlyrlkcsm**w*clyrrfmlfrhw*msirtnqtske
*kqmyhfkm*sn*rynhqqyrkl*m**pl*hw*ml*ryrkm*lqtkrl****skns**lr
fqdw*my*qti*cyhkwf*fnlwfnwwshwwwyrr*rxcktckn*klfyx*fkkiqknsk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC738 (SFC738Q) /CSM/SF/SFC7-B/SFC738Q.Seq.d/                       2179   0.0
CHM421 (CHM421Q) /CSM/CH/CHM4-A/CHM421Q.Seq.d/                       1330   0.0
CFC542 (CFC542Q) /CSM/CF/CFC5-B/CFC542Q.Seq.d/                       1324   0.0
CHS294 (CHS294Q) /CSM/CH/CHS2-D/CHS294Q.Seq.d/                       1322   0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/                       1314   0.0
SHG408 (SHG408Q) /CSM/SH/SHG4-A/SHG408Q.Seq.d/                       1310   0.0
SHF556 (SHF556Q) /CSM/SH/SHF5-C/SHF556Q.Seq.d/                       1310   0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/                       1310   0.0
SFC263 (SFC263Q) /CSM/SF/SFC2-C/SFC263Q.Seq.d/                       1310   0.0
SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/                       1306   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               60   4e-13  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    52   6e-05  17
AF134658|AF134658.1 Plasmodium falciparum strain SEN16 from Senegal CG2 omega repeat (cg2) gene, partial cds.    32   4e-04  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   5e-04  20
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   5e-04  13
AF134660|AF134660.1 Plasmodium falciparum strain COM6 from Comoros CG2 omega repeat (cg2) gene, partial cds.    32   6e-04  4
AF134683|AF134683.1 Plasmodium falciparum strain UNK1 CG2 omega repeat (cg2) gene, partial cds.    32   6e-04  4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   7e-04  14
AF134663|AF134663.1 Plasmodium falciparum strain AFR1 from Africa CG2 omega repeat (cg2) gene, partial cds.    32   0.001  4
AF134662|AF134662.1 Plasmodium falciparum strain UPV4 from Burkina Faso CG2 omega repeat (cg2) gene, partial cds.    32   0.001  4
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   355   e-146
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   199   7e-81
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   198   2e-80
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   165   2e-56
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   159   4e-47
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   151   3e-46
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 91   2e-25
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 91   6e-25
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 92   1e-24
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    80   6e-22
protein update 2009. 5.22
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SFC738 is cyt
5' end seq. ID SFC738F
5' end seq. 
>SFC738F.Seq
TTCAACCGGTTGTTGCAACACTCCAATNAATGTTGATGATAATAATCCATGTACCACTGA
CTCATGTACCAAATCAGGTGGTGTAACTCATACTCCAGTCAATGTTGATGATAATAACAA
ATGTACCACAGATTCATGTACCAAAGAAGGTGGTATAACTCATACTCCAATCTCTTGTGA
TGATAATAATCCATGTACACTTGACTCATGTTCACCAACAACTGGTTGTGTAAATAAACC
AATGAATGTTGATGATAATGATGCATGTACAACCGATACATGTAATAAAGATGGTACCAT
CACTCATACACCAATCAATACAGATGATAATAACAAATGTACATTAGATGCTTGTTCACC
AAANACTGGTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAA
TAAGTTGTTCACCATCAGTTGG----------
Length of 5' end seq. 442
3' end seq. ID SFC738Z
3' end seq. 
>SFC738Z.Seq
----------ACAATCAATAGTTGTTCACCATCAGTTGGTTGTATCTCAACACCAGTTTC
ATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCAT
CGAAGTCCCAATGAATTGTACCTCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGT
TTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATG
TGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTAC
CGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAA
GAATAAAAACAAATGTATCATTTCAAAATGTGATCCAATTAAAGGTACAATCACCAACAG
TACCGTAAACTGTGAATGTGATGACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGG
AAAATGTAATTACAGACAAAAAGATTGTGATGATAATAATCCAAAAACAGCTGATAGTTG
CGATTCCAAGACTGGTAAATGTATTAACAAACCATATAATGTTATCACAAGTGGTTCTAA
TTTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTGGTACAGGAGGTAAAGGNATTGC
AAAACTTGTAAAAATTAAAAACTCTTTTATTNATAATTTAAAAAAATTCAAAAAAATTCA
AAAAAAAA
Length of 3' end seq. 718
Connected seq. ID SFC738P
Connected seq. 
>SFC738P.Seq
TTCAACCGGTTGTTGCAACACTCCAATNAATGTTGATGATAATAATCCATGTACCACTGA
CTCATGTACCAAATCAGGTGGTGTAACTCATACTCCAGTCAATGTTGATGATAATAACAA
ATGTACCACAGATTCATGTACCAAAGAAGGTGGTATAACTCATACTCCAATCTCTTGTGA
TGATAATAATCCATGTACACTTGACTCATGTTCACCAACAACTGGTTGTGTAAATAAACC
AATGAATGTTGATGATAATGATGCATGTACAACCGATACATGTAATAAAGATGGTACCAT
CACTCATACACCAATCAATACAGATGATAATAACAAATGTACATTAGATGCTTGTTCACC
AAANACTGGTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAA
TAAGTTGTTCACCATCAGTTGG----------ACAATCAATAGTTGTTCACCATCAGTTG
GTTGTATCTCAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAAT
GTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACCTCTGATAAATGTAATG
AAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGA
ATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTAT
GTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAAT
TCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAAAATGTGATCCAA
TTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACCTTTGTAACATTG
GTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATTGTGATGATAATA
ATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTAACAAACCATATA
ATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTCTCATTGGTGGTG
GTACAGGAGGTAAAGGNATTGCAAAACTTGTAAAAATTAAAAACTCTTTTATTNATAATT
TAAAAAAATTCAAAAAAATTCAAAAAAAAA
Length of connected seq. 1160
Full length Seq ID -
Full length Seq. -
Length of full length seq. -