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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC674
Library SF
(Link to library)
Clone ID SFC674
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFC674P
(Link to Original site)
Representative DNA sequence 
>SFC674 (SFC674Q) /CSM/SF/SFC6-D/SFC674Q.Seq.d/
GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG
AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC
AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA
AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT
GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA
ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTNAAAGAGAGAGTTAGAAA
ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC
ATTGGTTTATCTTTTAXXXXXXXXXXATTGTCACTCCATTCCAAACTCGTTCATGGTATC
ATAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTA
CTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCG
CCACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTT
TCATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTG
AATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATC
TCAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGG
CAATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTT
TTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATT
TCTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATACTTACCA
CATTAAACCAAACTTCACTGAAGCTATTATGTCACACATAATTACCTTTACAAAATGGGT
AATGATCCAGATTATGTAAAAAACCATAGCCTCAAAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
*yflyiy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKE
VLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTXKERVRK
HFKATDQDPQMAVSIFSRLALVYLL---

---IVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDK
AAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFAT
PERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLV
PIVKEVCKEHNILTTLNQTSLKLLCHT*lplqng**srlckkp*pqk
Translated Amino Acid sequence (All Frames) 
Frame A:
vvfsvhiliel**nvksnyrkaillvrvsqt*h*k*llgcsrw*sl*yykmgtitsrw*r
sftfssr*rcykfi*klssnvr*tninfkel*nwiyfii*tskicskirflqdixres*k
tf*snrsrstngs*yfltfsiglsf---

---IVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNFDK
AAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFAT
PERPDEPSQINEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLV
PIVKEVCKEHNILTTLNQTSLKLLCHT*lplqng**srlckkp*pqk

Frame B:
*yflyiy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKE
VLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTXKERVRK
HFKATDQDPQMAVSIFSRLALVYLL---

---lslhsklvhgiinintftlhssmvfthsnivlkigkll*rmvkmvqfvlvspqisir
pltslvncllfssvssfhsviialqi*fvissllnsslvgisqlisklvmslkisnsllp
lkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvl*iiklfiiyshqllkisthnly
ql*kkfvknitylph*tklh*syyvthnylykmgndpdyvknhslkr

Frame C:
sifctyinrivikcqk*lqesntlgqs*pnitlkmivglqsmvkfmilqdgyhyiqvvkk
fyf*qqvemlqiylkviiqcqinqhqf*rimkldifhhmniqnlfknqistrhxkrelen
ilkqpikihkwqlvfshv*hwfif---

---chsipnsfmvs*isthlrstplwylhtqisysrlgsfckgw*kwcnsc*crhkfr*g
rlrhw*ivfcflpfhpstpls*lyrfnllfphc*irlwlvshn*fps*scr*rsqilcyp
*ktr*tisnq*rlgnpst*nysrlwswftplylf*wffkssscssfipincsrflpttct
nckrsl*rt*htyhikpnfteaimshiitftkwvmiqim*ktiask
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC674 (SFC674Q) /CSM/SF/SFC6-D/SFC674Q.Seq.d/                       2153   0.0
VFA219 (VFA219Q) /CSM/VF/VFA2-A/VFA219Q.Seq.d/                       1320   0.0
VFA320 (VFA320Q) /CSM/VF/VFA3-A/VFA320Q.Seq.d/                       1310   0.0
VFO589 (VFO589Q) /CSM/VF/VFO5-D/VFO589Q.Seq.d/                       1300   0.0
VFA388 (VFA388Q) /CSM/VF/VFA3-D/VFA388Q.Seq.d/                       1292   0.0
VFB864 (VFB864Q) /CSM/VF/VFB8-C/VFB864Q.Seq.d/                       1291   0.0
VFF269 (VFF269Q) /CSM/VF/VFF2-C/VFF269Q.Seq.d/                       1281   0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/                       1279   0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/                       1279   0.0
VFI746 (VFI746Q) /CSM/VF/VFI7-B/VFI746Q.Seq.d/                       1277   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BD092935|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants.  1118   0.0    3
BD082645|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids.  1118   0.0    3
BD082630|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids.  1118   0.0    3
AB029311|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds.   975   0.0    7
AB022097|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds.   149   e-109  10
AL355612|AL355612.8 Human DNA sequence from clone RP11-343P23 on chromosome 6 Contains  GSSs.    42   0.030  7
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    34   0.048  16
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             32   0.088  24
AL513209|AL513209.16 Human DNA sequence from clone RP11-177F15 on chromosome 1.    38   0.39   7
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    32   0.42   22
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   399   e-118
(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   263   2e-75
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   234   3e-60
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a...   149   2e-34
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...   145   3e-33
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...   140   8e-32
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   137   5e-31
CP001574_328(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   129   2e-28
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001.    127   5e-28
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...   124   4e-27
protein update 2009. 5.22
PSORT 

 psg: 0.70  gvh: 0.24  alm: 0.26  top: 0.80  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFC674 is nuc
5' end seq. ID SFC674F
5' end seq. 
>SFC674F.Seq
GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG
AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC
AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA
AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT
GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA
ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTNAAAGAGAGAGTTAGAAA
ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC
ATTGGTTTATCTTTTA----------
Length of 5' end seq. 436
3' end seq. ID SFC674Z
3' end seq. 
>SFC674Z.Seq
----------ATTGTCACTCCATTCCAAACTCGTTCATGGTATCATAAATATCAACACAT
TTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGC
TTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAA
GGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCG
TTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTG
GTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTAC
CCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATCCTTCAACTTAA
AACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAA
TCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGT
ACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATACTTACCACATTAAACCAAACTTC
ACTGAAGCTATTATGTCACACATAATTACCTTTACAAAATGGGTAATGATCCAGATTATG
TAAAAAACCATAGCCTCAAAAGA
Length of 3' end seq. 673
Connected seq. ID SFC674P
Connected seq. 
>SFC674P.Seq
GTAGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGG
AAAGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGC
AGTCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGA
AGTTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAAT
GTCAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGA
ACATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTNAAAGAGAGAGTTAGAAA
ACATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGC
ATTGGTTTATCTTTTA----------ATTGTCACTCCATTCCAAACTCGTTCATGGTATC
ATAAATATCAACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTA
CTCAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCG
CCACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTT
TCATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTG
AATTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATC
TCAAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGG
CAATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTT
TTAGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATT
TCTACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATACTTACCA
CATTAAACCAAACTTCACTGAAGCTATTATGTCACACATAATTACCTTTACAAAATGGGT
AATGATCCAGATTATGTAAAAAACCATAGCCTCAAAAGA
Length of connected seq. 1109
Full length Seq ID -
Full length Seq. -
Length of full length seq. -