NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC671
Library SF
(Link to library)
Clone ID SFC671
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13873-1
Original site URL
Representative seq. ID SFC671P
(Link to Original site)
Representative DNA sequence 
>SFC671 (SFC671Q) /CSM/SF/SFC6-C/SFC671Q.Seq.d/
ATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAAAGCTAGAGAAATTTT
GGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTC
AGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGG
TGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTT
AATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAAT
GATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGT
ATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACAT
TTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAA
TGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGG
TGCACCAAAATTTAAAGAAGCATTGCGTXXXXXXXXXXGATGCTATCAATCATTCGGGCT
ATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAAAGA
CTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTTTAA
ATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTGCAT
TCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTGCAA
TTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAATTA
AAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAATCGGTA
CACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAG
TTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTCTTG
GTACTGGTGAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATAATA
GATTAATGAAAATGAAGAAGAACTNAAAAACTTCATAGATCAAATGGTAATTCATTGAGT
ATGCTGGNAAGAGTTTATCATTTTAATAAAATAAAAAAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
f**l*f*KMSIESIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDG
DKSRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGV
SMAVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIG
APKFKEALR---

---DAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSHLKSSLNSGEQLMSRY
LEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCTNPERIKKAISEKTVN
SLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIADLVVGLGTGEIKSGAP
CRFERLSKYNRLMKMKKNXKTS*ikw*fieyagkslsf**nkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iliiiilkney*in*s*rnfg**r*snirs*smdk*rnvfsqstkwsinwys*si*ikrw
**kslfwiwcfecnc*ck*fnitnieryes**sksnr**nd*igwyke*iktwvqcnrwc
ingsgkssrfy*rcalvplhftigwk**ysftstmf*cy*wwktcr**ttisrvyasthw
ctki*rsia---

---DAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSHLKSSLNSGEQLMSRY
LEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCTNPERIKKAISEKTVN
SLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIADLVVGLGTGEIKSGAP
CRFERLSKYNRLMKMKKNXKTS*ikw*fieyagkslsf**nkkk

Frame B:
f**l*f*KMSIESIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDG
DKSRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGV
SMAVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIG
APKFKEALR---

---mlsiiraikmllklvlilllqnfgiqrlqnmiwisri*dphi*slv*ivvsn*cldi
*rf*ksiqlhslkihlvkmigkimvklqlqlvikfkslvmiyfvqiqkelkkqflrkl*i
hyy*k*iksvh*lkllklqnlqkklvgvv*lvivqvklmiisllil*lvlvlvk*nlvhl
vdlkdyqniid**k*rrtxklhrsngnslsmlxrvyhfnkikkn

Frame C:
fnnynfkk*vlnqlklekfwiveviqh*klkygqvkecfqpkyqvehqlvfmkhln*emv
ikvvildmvf*mqllm*ii*yhqh*kv*eliikkq*mik*lnwmvqrinqnlgpmqslvy
qwqwqeqplllkvcpctvtfhnwleivifvyqyhvlmllmvenmqvidyhfkslc*yplv
hqnlkkhc---

---cyqsfglsrcy*nwy*fccfrileskdfki*ygfqeyriltfev*fk*w*ainv*if
rdfkkvsncil*rsiw*r*lgksw*nyscnw**nsnhw**ftlyksrkn*ksnf*enckf
iiienksnrytn*ny*scktckrswlglfs*ssfr*n**sfhc*scswswyw*nkiwctl
*i*kiiki**ineneeelknfidqmvih*vcwxefiilik*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC671 (SFC671Q) /CSM/SF/SFC6-C/SFC671Q.Seq.d/                       2371   0.0
CFH624 (CFH624Q) /CSM/CF/CFH6-A/CFH624Q.Seq.d/                       1241   0.0
CFK240 (CFK240Q) /CSM/CF/CFK2-B/CFK240Q.Seq.d/                       1227   0.0
CFJ407 (CFJ407Q) /CSM/CF/CFJ4-A/CFJ407Q.Seq.d/                       1217   0.0
SFJ731 (SFJ731Q) /CSM/SF/SFJ7-B/SFJ731Q.Seq.d/                       1213   0.0
CHB680 (CHB680Q) /CSM/CH/CHB6-D/CHB680Q.Seq.d/                       1199   0.0
CFG491 (CFG491Q) /CSM/CF/CFG4-D/CFG491Q.Seq.d/                       1199   0.0
CFE810 (CFE810Q) /CSM/CF/CFE8-A/CFE810Q.Seq.d/                       1195   0.0
CFC343 (CFC343Q) /CSM/CF/CFC3-B/CFC343Q.Seq.d/                       1195   0.0
CHC316 (CHC316Q) /CSM/CH/CHC3-A/CHC316Q.Seq.d/                       1191   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09736|U09736.1 Entamoeba histolytica HM1:IMSS enolase (enl-1) mRNA, complete cds.    56   2e-22  4
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium.    58   6e-19  6
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium.    58   6e-19  6
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds.    58   6e-19  6
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds.    58   6e-19  6
BM162118|BM162118.1 EST564641 PyBS Plasmodium yoelii yoelii cDNA clone PYCKN41 5' end, mRNA sequence.    70   4e-18  3
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence.    70   5e-18  3
BM164058|BM164058.1 EST566581 PyBS Plasmodium yoelii yoelii cDNA clone PYCLP21 5' end, mRNA sequence.    70   6e-16  2
BM166362|BM166362.1 EST568885 PyBS Plasmodium yoelii yoelii cDNA clone PYCNG69 5' end, mRNA sequence.    70   1e-15  2
Y17298|Y17298.1 Cunninghamella elegans mRNA for enolase.           58   3e-15  4
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U615) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   218   e-114
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN...   222   e-113
(Q27727) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   224   e-112
AM910990_161(AM910990|pid:none) Plasmodium knowlesi strain H chr...   220   e-112
AK290525_1(AK290525|pid:none) Homo sapiens cDNA FLJ77877 complet...   221   e-112
(P09104) RecName: Full=Gamma-enolase;          EC=4.2.1.11; AltN...   221   e-112
BC054169_1(BC054169|pid:none) Xenopus laevis enolase 1, alpha, m...   219   e-112
(P17183) RecName: Full=Gamma-enolase;          EC=4.2.1.11; AltN...   221   e-112
DQ497985_1(DQ497985|pid:none) Polypterus senegalus enolase A mRN...   216   e-111
JC1039(JC1039)phosphopyruvate hydratase (EC 4.2.1.11) - rat           220   e-111
protein update 2009. 5.22
PSORT 

 psg: 0.56  gvh: 0.44  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFC671 is cyt
5' end seq. ID SFC671F
5' end seq. 
>SFC671F.Seq
ATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAAAGCTAGAGAAATTTT
GGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTC
AGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGG
TGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTT
AATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAAT
GATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGT
ATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACAT
TTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAA
TGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGG
TGCACCAAAATTTAAAGAAGCATTGCGT----------
Length of 5' end seq. 568
3' end seq. ID SFC671Z
3' end seq. 
>SFC671Z.Seq
----------GATGCTATCAATCATTCGGGCTATCAAGATGTTATTAAAATTGGTATTGA
TTCTGCTGCTTCAGAATTTTGGAATCCAAAGACTTCAAAATATGATATGGATTTCAAGAA
TATAGGATCCTCACATTTGAAGTCTAGTTTAAATAGTGGTGAGCAATTAATGTCTAGATA
TTTAGAGATTTTAAAAAAGTATCCAATTGCATTCTTTGAAGATCCATTTGGTGAAGATGA
TTGGGAAAATCATGGTAAAATTACAGCTGCAATTGGTAATAAAATTCAAATCATTGGTGA
TGATTTACTTTGTACAAATCCAGAAAGAATTAAAAAAGCAATTTCTGAGAAAACTGTAAA
TTCATTATTATTGAAAATAAATCAAATCGGTACACTAACTGAAACTATTGAAGCTGCAAA
ACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAGTTAGTCATCGTTCAGGTGAAACTGATGA
TCATTTCATTGCTGATCTTGTAGTTGGTCTTGGTACTGGTGAAATAAAATCTGGTGCACC
TTGTAGATTTGAAAGATTATCAAAATATAATAGATTAATGAAAATGAAGAAGAACTNAAA
AACTTCATAGATCAAATGGTAATTCATTGAGTATGCTGGNAAGAGTTTATCATTTTAATA
AAATAAAAAAAAAT
Length of 3' end seq. 664
Connected seq. ID SFC671P
Connected seq. 
>SFC671P.Seq
ATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAAAGCTAGAGAAATTTT
GGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTC
AGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGG
TGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTT
AATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAAT
GATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGT
ATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACAT
TTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAA
TGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGG
TGCACCAAAATTTAAAGAAGCATTGCGT----------GATGCTATCAATCATTCGGGCT
ATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAAAGA
CTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTTTAA
ATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTGCAT
TCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTGCAA
TTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAATTA
AAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAATCGGTA
CACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAG
TTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTCTTG
GTACTGGTGAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATAATA
GATTAATGAAAATGAAGAAGAACTNAAAAACTTCATAGATCAAATGGTAATTCATTGAGT
ATGCTGGNAAGAGTTTATCATTTTAATAAAATAAAAAAAAAT
Length of connected seq. 1232
Full length Seq ID -
Full length Seq. -
Length of full length seq. -