SFC593
Library SF
(Link to library)
Clone ID SFC593
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16365-1
Original site URL
Representative seq. ID SFC593Z
(Link to Original site)
Representative DNA sequence
>SFC593 (SFC593Q) /CSM/SF/SFC5-D/SFC593Q.Seq.d/
XXXXXXXXXXCNTCATCATCATCATCATCATCATCATCATCATCATCNTCATCNTCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCNGTCNTCATCNTCATC
NAGCTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---XIIIIIIIIIIIXIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIXXHXHX
A


Translated Amino Acid sequence (All Frames)
Frame A:
---XIIIIIIIIIIIXIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIXXHXHX
A


Frame B:
---sssssssssssssssssssssssssssssssssssssssssssssssssssvxixix
l


Frame C:
---hhhhhhhhhhhxhxhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhxssssss
s


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 187
length of database: 80,480,566
effective HSP length: 17
effective length of query: 170
effective length of database: 78,821,179
effective search space: 13399600430
effective search space used: 13399600430
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 30679270
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 187
length of database: T,251,742,201
effective HSP length: 22
effective length of query: 165
effective length of database: S,576,798,261
effective search space: 5870171713065
effective search space used: 5870171713065
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] 1071944152.dbm.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003.12.21
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 9,829,646
protein update 2009. 5.22
PSORT

psg: 1.01 gvh: 0.49 alm: -0.10 top: 0.53 tms: 0.13 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: plasma membrane
20.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFC593 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC593Z
3' end seq.
>SFC593Z.Seq
----------CNTCATCATCATCATCATCATCATCATCATCATCATCNTCATCNTCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCNGTCNTCATCNTCATC
NAGCTCA
Length of 3' end seq. 177
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -