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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC551
Library SF
(Link to library)
Clone ID SFC551
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10682-1
Original site URL
Representative seq. ID SFC551P
(Link to Original site)
Representative DNA sequence 
>SFC551 (SFC551Q) /CSM/SF/SFC5-C/SFC551Q.Seq.d/
AAATTCTAATCAGATAATAATTAAAAAATAAAAATGGAAACAATAAATAATAGAAATCCA
CAAGAAGTTAATACCAATGAAACTATGATCGAAAATCCAAAAGATAAAGTTTCAAATAAT
AATTTTATTCCTAAATTAAATTTAAATAATAATAATTTAAATAAAATTAATCAACCAGGT
GATTCTGAAACATTAGATAATCGTAGTAATCCATCCTCTCCAATTGAATCACCACTTTCA
ACTGCAAGAATTTCATCTTCACATAATATTTTGTTTAAAACTAGAGGTTATTATTTTATT
AAACCAATTAGCAAAGGTGGATATGGTCAAGTATTTTTAGCCATTACCAAATCAAATAAA
TTCTTTGCCATCAAATCAATTAACAAACGTGATACAATTGGAAAACATATGGTTAAAGAA
TTGATGGTTGAAXXXXXXXXXXGCATTGGGTATCATCATTTTTGAATTGTTAAGTGGTGA
AACCCCATTCGTTGGTGATAATCAAAATATGATTTTTGAAAAAATCACTAACTATACAAA
TGAAATAAATTTTCCATCTTATTTTTCTGAAGTTGCAATTGATTTAATTCAAAAATTATT
ACAAGTAGATCCATTAAAGAGATTAGGTGCAAATGGTGCTGATGAAGTTAAAAGACATCC
ATTCTTTAATGGAGTAAATTGGAGTAAAATTTATTCTCCAGAATCTTTGACATTCAAGCC
AAAAATAGAAAATGAATATGATTCCAGTTATTTTTTTGAAAGAGAAAATGTTAAAAAAAC
AGTTTCTGCTAAAAAAACAAACAACAAAAAACCAATTAAAAGATACCTTTTCAAAGGTTT
CAATTTTAAAAAAAATTAACCAAATCAAACAAATCATTATTTAAAACCTCTATTTATTAA
AAATCTGCAAGTGNATTTTNAGGGCGCATTAAAGG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kf*sdnn*KIKMETINNRNPQEVNTNETMIENPKDKVSNNNFIPKLNLNNNNLNKINQPG
DSETLDNRSNPSSPIESPLSTARISSSHNILFKTRGYYFIKPISKGGYGQVFLAITKSNK
FFAIKSINKRDTIGKHMVKELMVE---

---ALGIIIFELLSGETPFVGDNQNMIFEKITNYTNEINFPSYFSEVAIDLIQKLLQVDP
LKRLGANGADEVKRHPFFNGVNWSKIYSPESLTFKPKIENEYDSSYFFERENVKKTVSAK
KTNNKKPIKRYLFKGFNFKKN*pnqtnhylkplfiknlqvxfxgalk
Translated Amino Acid sequence (All Frames) 
Frame A:
kf*sdnn*KIKMETINNRNPQEVNTNETMIENPKDKVSNNNFIPKLNLNNNNLNKINQPG
DSETLDNRSNPSSPIESPLSTARISSSHNILFKTRGYYFIKPISKGGYGQVFLAITKSNK
FFAIKSINKRDTIGKHMVKELMVE---

---ALGIIIFELLSGETPFVGDNQNMIFEKITNYTNEINFPSYFSEVAIDLIQKLLQVDP
LKRLGANGADEVKRHPFFNGVNWSKIYSPESLTFKPKIENEYDSSYFFERENVKKTVSAK
KTNNKKPIKRYLFKGFNFKKN*pnqtnhylkplfiknlqvxfxgalk

Frame B:
nsnqiiikk*kwkq*iieihkklipmkl*skiqkikfqiiilfln*i*iiii*iklinqv
ilkh*iivvihplqlnhhfqlqefhlhiifclkleviillnqlakvdmvkyf*plpnqin
slpsnqltnviqleniwlkn*wl---

---hwvssflnc*vvkphslviiki*flkksltiqmk*ifhliflklqli*fknyyk*ih
*rd*vqmvlmklkdihslme*igvkfilqnl*hssqk*kmnmipviflkekmlkkqfllk
kqttknqlkdtfskvsilkkinqikqiii*nlyllkickxixrah*r

Frame C:
ilir**lknkngnnk**kstrs*yq*nydrkskr*sfk**fys*ikfk***fk*n*str*
f*nir*s**silsn*ittfncknfift*yfv*n*rllfy*tn*qrwiwssifshyqik*i
lchqin*qt*ynwktyg*ridg*---

---igyhhf*ivkw*npirw**skydf*knh*lyk*nkfsilff*scn*fnskiitsrsi
keirckwc**s*ktsil*wskle*nlfsrifdiqaknrk*i*fqlff*krkc*knsfc*k
nkqqktn*kipfqrfqf*kkltksnkslfktsiy*ksasxfxgrik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC551 (SFC551Q) /CSM/SF/SFC5-C/SFC551Q.Seq.d/                       1088   0.0
SSM622 (SSM622Q) /CSM/SS/SSM6-A/SSM622Q.Seq.d/                        611   e-174
SHJ555 (SHJ555Q) /CSM/SH/SHJ5-C/SHJ555Q.Seq.d/                        611   e-174
SFI863 (SFI863Q) /CSM/SF/SFI8-C/SFI863Q.Seq.d/                        611   e-174
SFI763 (SFI763Q) /CSM/SF/SFI7-C/SFI763Q.Seq.d/                        611   e-174
SFI481 (SFI481Q) /CSM/SF/SFI4-D/SFI481Q.Seq.d/                        611   e-174
SFF428 (SFF428Q) /CSM/SF/SFF4-B/SFF428Q.Seq.d/                        611   e-174
SFC216 (SFC216Q) /CSM/SF/SFC2-A/SFC216Q.Seq.d/                        611   e-174
CFH121 (CFH121Q) /CSM/CF/CFH1-A/CFH121Q.Seq.d/                        611   e-174
CFD120 (CFD120Q) /CSM/CF/CFD1-A/CFD120Q.Seq.d/                        611   e-174
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***.    68   4e-11  7
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    68   1e-09  9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    62   3e-08  18
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    66   5e-07  10
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   1e-05  25
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   4e-05  26
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   3e-04  20
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34   6e-04  11
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    34   8e-04  14
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34   9e-04  17
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54L81) RecName: Full=Probable serine/threonine-protein kinase ...   107   6e-22
AC116963_26(AC116963|pid:none) Dictyostelium discoideum chromoso...   107   6e-22
AC116979_80(AC116979|pid:none) Dictyostelium discoideum chromoso...    99   2e-19
AE014188_445(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    92   2e-17
AY596821_1(AY596821|pid:none) Plasmodium falciparum protein kina...    92   2e-17
CR382129_154(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    90   9e-17
AP008218_1393(AP008218|pid:none) Oryza sativa (japonica cultivar...    89   2e-16
BT067264_1(BT067264|pid:none) Zea mays full-length cDNA clone ZM...    89   2e-16
EU953572_1(EU953572|pid:none) Zea mays clone 1436272 unknown mRNA.     89   2e-16
(Q54HD2) RecName: Full=Probable serine/threonine-protein kinase ...    87   8e-16
protein update 2009. 5.22
PSORT 

 psg: 0.51  gvh: 0.13  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SFC551 is nuc
5' end seq. ID SFC551F
5' end seq. 
>SFC551F.Seq
AAATTCTAATCAGATAATAATTAAAAAATAAAAATGGAAACAATAAATAATAGAAATCCA
CAAGAAGTTAATACCAATGAAACTATGATCGAAAATCCAAAAGATAAAGTTTCAAATAAT
AATTTTATTCCTAAATTAAATTTAAATAATAATAATTTAAATAAAATTAATCAACCAGGT
GATTCTGAAACATTAGATAATCGTAGTAATCCATCCTCTCCAATTGAATCACCACTTTCA
ACTGCAAGAATTTCATCTTCACATAATATTTTGTTTAAAACTAGAGGTTATTATTTTATT
AAACCAATTAGCAAAGGTGGATATGGTCAAGTATTTTTAGCCATTACCAAATCAAATAAA
TTCTTTGCCATCAAATCAATTAACAAACGTGATACAATTGGAAAACATATGGTTAAAGAA
TTGATGGTTGAA----------
Length of 5' end seq. 432
3' end seq. ID SFC551Z
3' end seq. 
>SFC551Z.Seq
----------GCATTGGGTATCATCATTTTTGAATTGTTAAGTGGTGAAACCCCATTCGT
TGGTGATAATCAAAATATGATTTTTGAAAAAATCACTAACTATACAAATGAAATAAATTT
TCCATCTTATTTTTCTGAAGTTGCAATTGATTTAATTCAAAAATTATTACAAGTAGATCC
ATTAAAGAGATTAGGTGCAAATGGTGCTGATGAAGTTAAAAGACATCCATTCTTTAATGG
AGTAAATTGGAGTAAAATTTATTCTCCAGAATCTTTGACATTCAAGCCAAAAATAGAAAA
TGAATATGATTCCAGTTATTTTTTTGAAAGAGAAAATGTTAAAAAAACAGTTTCTGCTAA
AAAAACAAACAACAAAAAACCAATTAAAAGATACCTTTTCAAAGGTTTCAATTTTAAAAA
AAATTAACCAAATCAAACAAATCATTATTTAAAACCTCTATTTATTAAAAATCTGCAAGT
GNATTTTNAGGGCGCATTAAAGG
Length of 3' end seq. 493
Connected seq. ID SFC551P
Connected seq. 
>SFC551P.Seq
AAATTCTAATCAGATAATAATTAAAAAATAAAAATGGAAACAATAAATAATAGAAATCCA
CAAGAAGTTAATACCAATGAAACTATGATCGAAAATCCAAAAGATAAAGTTTCAAATAAT
AATTTTATTCCTAAATTAAATTTAAATAATAATAATTTAAATAAAATTAATCAACCAGGT
GATTCTGAAACATTAGATAATCGTAGTAATCCATCCTCTCCAATTGAATCACCACTTTCA
ACTGCAAGAATTTCATCTTCACATAATATTTTGTTTAAAACTAGAGGTTATTATTTTATT
AAACCAATTAGCAAAGGTGGATATGGTCAAGTATTTTTAGCCATTACCAAATCAAATAAA
TTCTTTGCCATCAAATCAATTAACAAACGTGATACAATTGGAAAACATATGGTTAAAGAA
TTGATGGTTGAA----------GCATTGGGTATCATCATTTTTGAATTGTTAAGTGGTGA
AACCCCATTCGTTGGTGATAATCAAAATATGATTTTTGAAAAAATCACTAACTATACAAA
TGAAATAAATTTTCCATCTTATTTTTCTGAAGTTGCAATTGATTTAATTCAAAAATTATT
ACAAGTAGATCCATTAAAGAGATTAGGTGCAAATGGTGCTGATGAAGTTAAAAGACATCC
ATTCTTTAATGGAGTAAATTGGAGTAAAATTTATTCTCCAGAATCTTTGACATTCAAGCC
AAAAATAGAAAATGAATATGATTCCAGTTATTTTTTTGAAAGAGAAAATGTTAAAAAAAC
AGTTTCTGCTAAAAAAACAAACAACAAAAAACCAATTAAAAGATACCTTTTCAAAGGTTT
CAATTTTAAAAAAAATTAACCAAATCAAACAAATCATTATTTAAAACCTCTATTTATTAA
AAATCTGCAAGTGNATTTTNAGGGCGCATTAAAGG
Length of connected seq. 925
Full length Seq ID -
Full length Seq. -
Length of full length seq. -