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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC534
Library SF
(Link to library)
Clone ID SFC534
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID SFC534P
(Link to Original site)
Representative DNA sequence 
>SFC534 (SFC534Q) /CSM/SF/SFC5-B/SFC534Q.Seq.d/
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAGAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXTGATCCAGNTAT
AGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTGTAT
TACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAANCCACCTTGTTTAAT
AAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGT
ATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAAC
TGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAAC
TCCAACTACAACTCCAACTCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---DPXIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGXPPCLINPINCTSTDPCIF
SYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTP
Translated Amino Acid sequence (All Frames) 
Frame A:
i*tfnk*ntikiniiyifivtlyeyleigkhflkigkhy*kkk*idf*l*kk---

---*sxyrlll**v**l*cm*ccrylyyk*fmlpkgm*skrextlfnkpy*lykh*smhf
fil*kwcmysnihlysnsicnsncypncysncypncytnrysnrypnsnynsns

Frame B:
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---DPXIGCYYDKFDNCDACNAVDTCITNDLCFPRECNPRGXPPCLINPINCTSTDPCIF
SYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTP

Frame C:
mni**ikhnknqyylyiysnii*ifrnwktffknwktllkkein*fliikkk---

---iqx*vvimisliivmhvml*ilvlqmiyasqgnviqegxhlv**tllivqalihaff
hivkmvyvfqhtfvlqlhl*lqllpqlllqllpqllhqpllqplpqlqlqlql
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/                        650   0.0
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/                        650   0.0
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        650   0.0
SFC534 (SFC534Q) /CSM/SF/SFC5-B/SFC534Q.Seq.d/                        650   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        650   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        650   0.0
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        650   0.0
CHC347 (CHC347Q) /CSM/CH/CHC3-B/CHC347Q.Seq.d/                        650   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        650   0.0
CFC681 (CFC681Q) /CSM/CF/CFC6-D/CFC681Q.Seq.d/                        650   0.0
own update 2004. 5.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   3e-07  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-06  14
CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   3e-06  3
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   1e-05  10
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   2e-05  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-05  11
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    36   1e-04  9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   1e-04  11
AC124744|AC124744.1 Mus musculus chromosome UNK clone RP23-223E16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46   2e-04  6
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   4e-04  2
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                166   3e-40
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 57   3e-07
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 53   3e-06
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 49   8e-05
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 37   0.19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 36   0.43
AM746676_9366(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    36   0.43
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 34   1.6
AB177798_1(AB177798|pid:none) Homo sapiens FBN3 gene for fibrill...    34   1.6
AB177799_1(AB177799|pid:none) Homo sapiens FBN3 gene for fibrill...    34   1.6
protein update 2009. 1. 6
PSORT 

 psg: 0.52  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFC534 is cyt
5' end seq. ID SFC534F
5' end seq. 
>SFC534F.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAGAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 158
3' end seq. ID SFC534Z
3' end seq. 
>SFC534Z.Seq
----------TGATCCAGNTATAGGTTGTTATTATGATAAGTTTGATAATTGTGATGCAT
GTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAA
GAGGGAANCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCACTGATCCATGCATTT
TTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTACTCCAACTCCATCTG
TAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCG
TTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAACTCCA
Length of 3' end seq. 334
Connected seq. ID SFC534P
Connected seq. 
>SFC534P.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAGAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------TGATCCAGNTAT
AGGTTGTTATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTGTAT
TACAAATGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAANCCACCTTGTTTAAT
AAACCCTATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGT
ATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAAC
TGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAAC
TCCAACTACAACTCCAACTCCA
Length of connected seq. 492
Full length Seq ID -
Full length Seq. -
Length of full length seq. -