>SFC488 (SFC488Q) /CSM/SF/SFC4-D/SFC488Q.Seq.d/
GAAAAAAAGTTTAACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACTTGATCTTTT
TTATTTTATATCACACACATACATAATAAAAAACTATGGCAACTCAACAACAACAACAAC
AACAACAACAACAACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTCAACAAGCAC
AATCTGCTTCTGATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTACAACAGAAT
CAATACTTGGTGATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGATTAAAGGATG
TAGCAGTAAAGGTTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATTTCAGAAAGG
AAGTTGCAATTATGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAGGTGCATGTA
CATCTACACCAGGTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATCTTGAATCAT
TATTATTAGACCCAATGGTTAAACTCCCATTGATCACTCGTATGAGAATGGCAAAAGATG
CAGCTTTAGGTGTTTTXXXXXXXXXX

kkv*pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQQAQ
SASDILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDFRKE
VAIMSKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLLLDPMVKLPLITRMRMAKDA
ALGV---

Frame A:
ekkfnhik*erqvyikt*sflfyithihnkklwqlnnnnnnnnnnnsklrlekiykfnkh
nllliy*dhqkfqklklqqnqylvmevlvlfikvvvd*rm*q*rlc*nksikrl*liser
klql*vkffiqilyff*vhvhlhqvnl*fvqn**kvilnhyy*tqwlnsh*slv*ewqkm
ql*vf---


Frame B:
kkslti*sekdkct*kldlfyfishtyiiknygnstttttttttttan*g*krytnstst
icf*yirttrnfrn*nynrintw*wkfwycl*rsl*ikgcsskgyvktsrskdfn*fqkg
scnye*nfsskyctffrcmyiytr*tydlyriner*s*iiiirpng*tpidhsyengkrc
sfrc---


Frame C:
kkv*pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQQAQ
SASDILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDFRKE
VAIMSKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLLLDPMVKLPLITRMRMAKDA
ALGV---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO835 (VFO835Q) /CSM/VF/VFO8-B/VFO835Q.Seq.d/                        785   0.0
SFC488 (SFC488Q) /CSM/SF/SFC4-D/SFC488Q.Seq.d/                        785   0.0
AFM648 (AFM648Q) /CSM/AF/AFM6-B/AFM648Q.Seq.d/                        785   0.0
AFM201 (AFM201Q) /CSM/AF/AFM2-A/AFM201Q.Seq.d/                        785   0.0
AFK731 (AFK731Q) /CSM/AF/AFK7-B/AFK731Q.Seq.d/                        785   0.0
AFF486 (AFF486Q) /CSM/AF/AFF4-D/AFF486Q.Seq.d/                        785   0.0
AFE822 (AFE822Q) /CSM/AF/AFE8-A/AFE822Q.Seq.d/                        785   0.0
AFA156 (AFA156Q) /CSM/AF/AFA1-C/AFA156Q.Seq.d/                        785   0.0
VFK734 (VFK734Q) /CSM/VF/VFK7-B/VFK734Q.Seq.d/                        777   0.0
VFD621 (VFD621Q) /CSM/VF/VFD6-A/VFD621Q.Seq.d/                        777   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ297966|AJ297966.1 Dictyostelium discoideum mRNA for SHK1 protein.   490   0.0    2
BU582405|BU582405.1 PL N82 P.lunula ZAP-cDNA library Pyrocystis lunula cDNA clone 731 5' similar to SHK1 protein kinase, mRNA sequence.    50   2e-04  2
BX571697|BX571697.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.001  9
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    36   0.006  8
AC114104|AC114104.4 Rattus norvegicus clone CH230-23N19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.010  9
AC124215|AC124215.14 Medicago truncatula clone mth2-32m6, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46   0.013  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   0.029  15
AC023656|AC023656.2 Homo sapiens chromosome 7 clone RP11-768N16 map 7, WORKING DRAFT SEQUENCE, 16 unordered pieces.    36   0.030  8
AP001777|AP001777.2 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-716B20, WORKING DRAFT SEQUENCE, 22 unordered pieces.    50   0.033  1
AC087534|AC087534.8 Homo sapiens chromosome 18, clone RP11-716B20, complete sequence.    50   0.033  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RB7) RecName: Full=Dual specificity protein kinase shkA;    ...   209   3e-53
(Q54Y55) RecName: Full=Dual specificity protein kinase shkC;    ...   129   5e-29
(Q54IP4) RecName: Full=Dual specificity protein kinase shkB;    ...    80   4e-14
EF014090_1(EF014090|pid:none) Synthetic construct flag-tagged pr...    77   3e-13
AM435166_2(AM435166|pid:none) Vitis vinifera contig VV78X053282....    77   4e-13
AC012679_7(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ...    76   5e-13
AY059769_1(AY059769|pid:none) Arabidopsis thaliana putative prot...    76   5e-13
EF014094_1(EF014094|pid:none) Synthetic construct HA-tagged prot...    76   5e-13
AC012563_26(AC012563|pid:none) Arabidopsis thaliana chromosome 1...    76   5e-13
DQ508127_1(DQ508127|pid:none) Synthetic construct flag-tagged pr...    76   5e-13

 psg: 0.66  gvh: 0.44  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SFC488 is cyt

>SFC488F.Seq
GAAAAAAAGTTTAACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACTTGATCTTTT
TTATTTTATATCACACACATACATAATAAAAAACTATGGCAACTCAACAACAACAACAAC
AACAACAACAACAACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTCAACAAGCAC
AATCTGCTTCTGATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTACAACAGAAT
CAATACTTGGTGATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGATTAAAGGATG
TAGCAGTAAAGGTTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATTTCAGAAAGG
AAGTTGCAATTATGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAGGTGCATGTA
CATCTACACCAGGTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATCTTGAATCAT
TATTATTAGACCCAATGGTTAAACTCCCATTGATCACTCGTATGAGAATGGCAAAAGATG
CAGCTTTAGGTGTTTT----------