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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SFC405
Library SF
(Link to library)
Clone ID SFC405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFC405P
(Link to Original site)
Representative DNA sequence 
>SFC405 (SFC405Q) /CSM/SF/SFC4-A/SFC405Q.Seq.d/
CACTGTTGGCCTACTGGGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAA
AAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAA
AAAAANCCAAAAAAAAAAXXXXXXXXXXCCAGATTTCCATANATGTGTTNAAANACGTGG
TGGTATCTTAAGNTGNGAATTTGANCCNCCAANACAACCAAGATCCCTTGATTGGGCTGA
AAATNAAAATGATGATCGTGACTATNATGATCGNGCCTATNATGATGATGAATATGATGG
TGANTATNATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATNATGATGA
CAATTATTATGGTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptg*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKXPKKK---

---PDFHXCVXXRGGILXXEFXPPXQPRSLDWAENXNDDRDYXDRAYXDDEYDGXYXGRD
GDYDGDYDGDYXDDNYYG
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptg*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKXPKKK---

---PDFHXCVXXRGGILXXEFXPPXQPRSLDWAENXNDDRDYXDRAYXDDEYDGXYXGRD
GDYDGDYDGDYXDDNYYG

Frame B:
tvgllgsilfifklnintikks*n*ickinl*qklvi*kkkxqkk---

---qisixvxkxvvvs*xxnlxxqxnqdpliglkxkmmivtxmixpxmmmnmmvxxmavt
vtmmvimmvixmmtiimv

Frame C:
llaywvvfcsysn*isiqlkkvkikfvksicnkn**fkkkkxkkk---

---rfpxmcxxtwwylkxxi*xxxttkip*lg*kxk**s*lx*sxlx***i*w*xxwp*r
*l*w*l*w*lx**qllw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC405 (SFC405Q) /CSM/SF/SFC4-A/SFC405Q.Seq.d/                        359   2e-98
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                        351   5e-96
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        351   5e-96
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        351   5e-96
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        351   5e-96
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        351   5e-96
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        351   5e-96
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        351   5e-96
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        351   5e-96
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        351   5e-96
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   351   e-126  3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   351   e-124  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   351   e-120  8
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   351   e-109  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   8e-26  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    82   6e-12  1
AL512622|AL512622.9 Human DNA sequence from clone RP11-140A10 on chromosome 10.    46   5e-06  3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    42   3e-05  7
BE030092|BE030092.1 kp38f10.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element MSR1 repetitive element ;, mRNA sequence.    40   9e-05  2
AC131484|AC131484.1 Lytechinus variegatus clone Lv177F13, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   1e-04  2
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    53   4e-06
protein update 2009. 1. 6
PSORT 

 psg: 0.29  gvh: 0.53  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.06
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFC405 is nuc
5' end seq. ID SFC405F
5' end seq. 
>SFC405F.Seq
CACTGTTGGCCTACTGGGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAA
AAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAA
AAAAANCCAAAAAAAAAA----------
Length of 5' end seq. 138
3' end seq. ID SFC405Z
3' end seq. 
>SFC405Z.Seq
----------CCAGATTTCCATANATGTGTTNAAANACGTGGTGGTATCTTAAGNTGNGA
ATTTGANCCNCCAANACAACCAAGATCCCTTGATTGGGCTGAAAATNAAAATGATGATCG
TGACTATNATGATCGNGCCTATNATGATGATGAATATGATGGTGANTATNATGGCCGTGA
CGGTGACTATGATGGTGATTATGATGGTGATTATNATGATGACAATTATTATGGTG
Length of 3' end seq. 226
Connected seq. ID SFC405P
Connected seq. 
>SFC405P.Seq
CACTGTTGGCCTACTGGGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAA
AAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAA
AAAAANCCAAAAAAAAAA----------CCAGATTTCCATANATGTGTTNAAANACGTGG
TGGTATCTTAAGNTGNGAATTTGANCCNCCAANACAACCAAGATCCCTTGATTGGGCTGA
AAATNAAAATGATGATCGTGACTATNATGATCGNGCCTATNATGATGATGAATATGATGG
TGANTATNATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATNATGATGA
CAATTATTATGGTG
Length of connected seq. 364
Full length Seq ID -
Full length Seq. -
Length of full length seq. -