SFC367
Library SF
(Link to library)
Clone ID SFC367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SFC367Z
(Link to Original site)
Representative DNA sequence
>SFC367 (SFC367Q) /CSM/SF/SFC3-C/SFC367Q.Seq.d/
XXXXXXXXXXTGAAAATACCATTGGTGTAATTCCAACATTGGGTGTAACATTTACACTAC
AATATGAAGATGTTAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACCGGAC
TTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAAC
CAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATA
AATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTC
ACAAGGATTTGGTATTCGATGTTAACTATCTTGGTGGCAATATGCCAACATTTTCATTGA
ATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTC
GTAGTGGATATACCGCAGTTCGTCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGC
AAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTG
CATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATA
GAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTG
TAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQP
EIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLN
FSRPGGQIVCQYYNFLRHGRSGYTAVRQACLDHGIFISKQVKKHGIFDIVYDGTGALPGA
CWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSH


Translated Amino Acid sequence (All Frames)
Frame A:
---ENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQP
EIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLN
FSRPGGQIVCQYYNFLRHGRSGYTAVRQACLDHGIFISKQVKKHGIFDIVYDGTGALPGA
CWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSH


Frame B:
---kiplv*fqhwv*hlhynmkmlkefqklwinlkkkpdliyqfmsmqqvvvslhpffnq
klfgildyhvlnqlmalvinlvylhwelagsygevkmtftriwysmltilvaicqhfh*i
shvqvvk*yastitfcamvvvdipqfvklv*imvfsfpsklkntvflilfmmvlvhfqvh
vgn*kkmqk*nsisltfqie*eievgklhpilyqtyqil*fkey*ldmvsv


Frame C:
---kyhwcnsnigcniytti*rc*rnfrsfg*i*krnrt*ytnscrcskwwfrctlsstr
nclgf*tttc*in*wlws*iwsisigswlgrmer*k*hsqgfgirc*lswwqyanifief
ltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfqas*ktryf*ycl*wywctsrcm
leiekrckskiqsl*pfr*nek*rlancilystkltrycssksin*twfqs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC367 (SFC367Q) /CSM/SF/SFC3-C/SFC367Q.Seq.d/ 1364 0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/ 1348 0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/ 1348 0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/ 1348 0.0
CFI817 (CFI817Q) /CSM/CF/CFI8-A/CFI817Q.Seq.d/ 1344 0.0
CFF522 (CFF522Q) /CSM/CF/CFF5-A/CFF522Q.Seq.d/ 1342 0.0
CFA210 (CFA210Q) /CSM/CF/CFA2-A/CFA210Q.Seq.d/ 1326 0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/ 1275 0.0
AFO558 (AFO558Q) /CSM/AF/AFO5-C/AFO558Q.Seq.d/ 1275 0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/ 1265 0.0

own update 2003. 5.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence. 66 1e-09 2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence. 70 4e-08 1
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds. 58 2e-07 2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence. 50 2e-07 2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence. 66 7e-07 1
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence. 64 3e-06 1
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence. 64 3e-06 1
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence. 64 3e-06 1
CF514038|CF514038.1 CAbud0007_IVF_G07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IVF_G07 5', mRNA sequence. 64 3e-06 1
CB910900|CB910900.1 VVD157G07_379711 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD157G07 5, mRNA sequence. 64 3e-06 1
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 345 1e-93
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 342 8e-93
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 335 6e-91
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 335 1e-90
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 330 2e-89
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 320 2e-86
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 314 1e-84
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 314 2e-84
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 311 2e-83
CP000937_903(CP000937|pid:none) Francisella philomiragia subsp. ... 311 2e-83
protein update 2009. 5.22
PSORT

psg: 0.75 gvh: 0.47 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: vacuolar

>> prediction for SFC367 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC367Z
3' end seq.
>SFC367Z.Seq
----------TGAAAATACCATTGGTGTAATTCCAACATTGGGTGTAACATTTACACTAC
AATATGAAGATGTTAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACCGGAC
TTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAAC
CAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATA
AATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTC
ACAAGGATTTGGTATTCGATGTTAACTATCTTGGTGGCAATATGCCAACATTTTCATTGA
ATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTC
GTAGTGGATATACCGCAGTTCGTCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGC
AAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTG
CATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATA
GAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTG
TAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCAT
Length of 3' end seq. 688
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -