NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC304
Library SF
(Link to library)
Clone ID SFC304
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFC304Z
(Link to Original site)
Representative DNA sequence 
>SFC304 (SFC304Q) /CSM/SF/SFC3-A/SFC304Q.Seq.d/
XXXXXXXXXXCAGATTGTAANAAAGCAANATGTGANGATGTNGAATGTCCAGATTTCCAT
AGATGTGTTNAAANACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGTCAACCA
AGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATNATGATCGTGACTAT
GATGATGATGAATATGATGGTGATTATGATGGCCGTNACGGTGACTATGATGGTGATTAT
GATGGTNATTATNATGATGNCAATTNTTATGGTGATGATGACTATGATAATGATTGGGAC
AATGATAATGNTTGGGGTAATGATTGGGATAATGATTNGGACAATGAAGATGGTCATAAT
TGGAATGATGANGACTTCCAAGATGCAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---DCXKAXCXDVECPDFHRCVXXRGGILSCEFDPPSQPRSLDWAENENDDRDYXDRDYD
DDEYDGDYDGRXGDYDGDYDGXYXDXNXYGDDDYDNDWDNDNXWGNDWDNDXDNEDGHNW
NDXDFQDA
Translated Amino Acid sequence (All Frames) 
Frame A:
---rl*xsxm*xcxmsrfp*mcxxtwwylkl*i*stkstkip*lg*k*k**s*lx*s*l*
***i*w*l*wpxr*l*w*l*wxlx*xqxlw***l***lgq**xlg**lg**xgq*rws*l
e**xlprc


Frame B:
---DCXKAXCXDVECPDFHRCVXXRGGILSCEFDPPSQPRSLDWAENENDDRDYXDRDYD
DDEYDGDYDGRXGDYDGDYDGXYXDXNXYGDDDYDNDWDNDNXWGNDWDNDXDNEDGHNW
NDXDFQDA


Frame C:
---ivxkqxvxmxnvqisidvxkxvvvs*vvnlihqvnqdpliglkmkmmivtxmivtmm
mmnmmvimmavtvtmmvimmvixmmxixmvmmtmimigtmimxgvmigimixtmkmviig
mmxtskmq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC304 (SFC304Q) /CSM/SF/SFC3-A/SFC304Q.Seq.d/                        198   4e-50
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        190   1e-47
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        190   1e-47
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        190   1e-47
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        190   1e-47
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        190   1e-47
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        190   1e-47
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        190   1e-47
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        190   1e-47
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        190   1e-47
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   190   1e-88  2
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   190   2e-88  2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   190   2e-87  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   190   6e-85  3
AQ950783|AQ950783.1 Sheared DNA-52C14.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-52C14, genomic survey sequence.    42   5.4    1
AL484659|AL484659.1 T. brucei sheared genomic DNA clone 291e02, forward sequence.    42   5.4    1
AQ656767|AQ656767.1 Sheared DNA-21D17.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-21D17, genomic survey sequence.    42   5.4    1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    94   1e-18
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    35   0.79
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    34   1.3
protein update 2009. 1. 6
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SFC304 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC304Z
3' end seq. 
>SFC304Z.Seq
----------CAGATTGTAANAAAGCAANATGTGANGATGTNGAATGTCCAGATTTCCAT
AGATGTGTTNAAANACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGTCAACCA
AGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATNATGATCGTGACTAT
GATGATGATGAATATGATGGTGATTATGATGGCCGTNACGGTGACTATGATGGTGATTAT
GATGGTNATTATNATGATGNCAATTNTTATGGTGATGATGACTATGATAATGATTGGGAC
AATGATAATGNTTGGGGTAATGATTGGGATAATGATTNGGACAATGAAGATGGTCATAAT
TGGAATGATGANGACTTCCAAGATGCAA
Length of 3' end seq. 378
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -