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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC295
Library SF
(Link to library)
Clone ID SFC295
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SFC295P
(Link to Original site)
Representative DNA sequence 
>SFC295 (SFC295Q) /CSM/SF/SFC2-D/SFC295Q.Seq.d/
TGGCCTACTGGNATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCA
GCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACC
GCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCAT
TTCGATCGTGAACGTATCCCAGAACGTGTTGTNCATGCTAAAGGTGCTGGTGCCCATGGT
TATTTCGAAGTTACCTCAAGTGACGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAA
GTTGGTAAGAGAACACCAATCTTCACCCGNTTCTCTACTGTTTGGTGGTGAAAAAGGTTC
ATCCGATTCTGAAAGAGATCCAAGAGGTTTCGXXXXXXXXXXAGAGAATTACTTTGCTGA
AGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGA
TAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGT
AAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTA
CCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACC
AAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTC
TGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGA
TTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCA
CATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGC
TGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCAT
CAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAA
AAATAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
gllxyilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linlli
sivnvsqnvlxmlkvlvpmvisklpqvtyqngvklns*IKLVREHQSSPXSLLFGGEKGS
SDSERDPRGF---

---ENYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPF
AVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHP
NDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKG
LGIDVNDVIKFAARSNL*inilkiikk*knkk
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgiyfiwek*ink*inmsapvlttssgspidnnlnsmtagvngpiliqdftlidklah
fdreripervvhakgagahgyfevtssdvpkwckakflnkvgkrtpiftrfstvww*krf
irf*krskrf---

---rellc*s*tsclltiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsi
rrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqss
k*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*g
swy*c**chqirc*iklvnqyiknnkkikk*kk

Frame B:
gllxyilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linlli
sivnvsqnvlxmlkvlvpmvisklpqvtyqngvklns*IKLVREHQSSPXSLLFGGEKGS
SDSERDPRGF---

---ENYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPF
AVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHP
NDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKG
LGIDVNDVIKFAARSNL*inilkiikk*knkk

Frame C:
aywxifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsf
rs*typrtccxc*rcwcpwlfrsylk*rtkmv*s*ilk*sw*entnlhpxlyclvvkkvh
pilkeiqevs---

---ritllklnklpshhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhs
p*rvvlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiq
mttlfnqviyidsclkmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrv
lvlmlmmssnslldqtcksiy*k**knkkikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC295 (SFC295Q) /CSM/SF/SFC2-D/SFC295Q.Seq.d/                       1800   0.0
SLH603 (SLH603Q) /CSM/SL/SLH6-A/SLH603Q.Seq.d/                       1183   0.0
SFK763 (SFK763Q) /CSM/SF/SFK7-C/SFK763Q.Seq.d/                       1183   0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/                       1183   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                       1183   0.0
FC-AH16 (FC-AH16Q) /CSM/FC/FC-AH/FC-AH16Q.Seq.d/                     1183   0.0
CHD605 (CHD605Q) /CSM/CH/CHD6-A/CHD605Q.Seq.d/                       1183   0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/                        1183   0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/                       1183   0.0
AHN780 (AHN780Q) /CSM/AH/AHN7-D/AHN780Q.Seq.d/                       1183   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.  1183   0.0    2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1183   0.0    3
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.    82   3e-39  5
AY378080|AY378080.1 Tetrahymena thermophila putative catalase (CAT) mRNA, complete cds.    50   5e-14  6
U40704|U40704.1 Candida albicans catalase (Cat) gene, complete cds.    68   7e-14  3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR.    76   4e-13  2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type.    76   4e-13  2
AX536932|AX536932.1 Sequence 533 from Patent WO02064766.           64   5e-13  3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds.    64   1e-10  3
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse74e09_q1c.    74   4e-09  1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   403   e-111
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   218   3e-55
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   216   1e-54
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   206   1e-51
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   206   1e-51
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   201   4e-50
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   198   2e-49
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   193   7e-48
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   193   9e-48
BX842648_56(BX842648|pid:none) Bdellovibrio bacteriovorus comple...   186   1e-45
protein update 2009. 5.22
PSORT 

 psg: 0.88  gvh: 0.45  alm: 0.47  top: 0.40  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFC295 is cyt
5' end seq. ID SFC295F
5' end seq. 
>SFC295F.Seq
TGGCCTACTGGNATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCA
GCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACC
GCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCAT
TTCGATCGTGAACGTATCCCAGAACGTGTTGTNCATGCTAAAGGTGCTGGTGCCCATGGT
TATTTCGAAGTTACCTCAAGTGACGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAA
GTTGGTAAGAGAACACCAATCTTCACCCGNTTCTCTACTGTTTGGTGGTGAAAAAGGTTC
ATCCGATTCTGAAAGAGATCCAAGAGGTTTCG----------
Length of 5' end seq. 392
3' end seq. ID SFC295Z
3' end seq. 
>SFC295Z.Seq
----------AGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACA
TGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATC
CAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCAT
TCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTA
ATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAG
AATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATC
CAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAAT
CTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAG
TTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGG
GTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCA
ATATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAA
Length of 3' end seq. 630
Connected seq. ID SFC295P
Connected seq. 
>SFC295P.Seq
TGGCCTACTGGNATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCA
GCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACC
GCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCAT
TTCGATCGTGAACGTATCCCAGAACGTGTTGTNCATGCTAAAGGTGCTGGTGCCCATGGT
TATTTCGAAGTTACCTCAAGTGACGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAA
GTTGGTAAGAGAACACCAATCTTCACCCGNTTCTCTACTGTTTGGTGGTGAAAAAGGTTC
ATCCGATTCTGAAAGAGATCCAAGAGGTTTCG----------AGAGAATTACTTTGCTGA
AGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGA
TAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGT
AAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTA
CCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACC
AAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTC
TGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGA
TTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCA
CATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGC
TGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCAT
CAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAA
AAATAAAAAAAA
Length of connected seq. 1022
Full length Seq ID -
Full length Seq. -
Length of full length seq. -