SFC285 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFC285
Library	SF (Link to library)
Clone ID	SFC285 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U00906-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFC2-D/SFC285Q.Seq.d/
Representative seq. ID	SFC285P (Link to Original site)
Representative DNA sequence	>SFC285 (SFC285Q) /CSM/SF/SFC2-D/SFC285Q.Seq.d/ CACTGTTGGCCTACTGGTATATAGACCAGCTATAGAATCAGGATTTTTATCAGNATGTAG CTTCAATGATATGGTTTAGTTATAGGAAAGATTTCCCACCAATAGAAAATACAAATATTA CTACAGATATTGGTTGGGGTTGTATGTTAAGAACTGGTCAAATGATATTAGCTAGAGCAT TAATTAAACATCTTTATAAAGAAAATGATATGGTACCAGTAAATAGTAAGAATGTAAACC ACATTCAAATTATAGCCAAGTGTTGGCATGGTTTAGTGATTATCCTTCAAAGGAGCATGT ATATGGTATACATCAAATTGTAAATAAAAAACAAGCAATGGAAAAGAATAATAGAAAACA ACAAATTTTAAGAGAACAAGTGATTTCATTAAATCGAGGAGGAGGAGGAAGTTCTAAAGG AAAAAAGAAAAAAGAAAAAGAAGAAGAGATAAATGATAATGTAGAGGAATGGTTAGCTCC AACTAGAATTTCAAATATTTTAAGACAATTAATTAAATTTCAACATTTGGAAGATTTAGA AATGTACGTTCCAACTGATGGTGTCATATATAAAGATTATATAAATAATTTATGTAATAA TAGTAATACACATAATCATTATCAAATTATTCAACAACAATTACAACATTTAAGAGAACA ACAAAATATTCAACAAAATAATAATTATAAATAXXXXXXXXXXCCACAACAACTACAACA ACCACAGCAACAAGTAGTAATAATACCAATAATCAATCACCACCATCTAGAATACCAAAT GGATATAATAATCAAGTATTTGATGATGAATCATTATTTGACTATAACACAGCTATTAGT TCAATACCACCAAAGTGGAAATCATTGATTATTATGATACCTTTGAAATTGGGTGCAGAT AAATTAAACTCAACCTATATTGAAAAATTAAAATTATTATTAAAATTACCACAAAGTTTA GGTTTTATTGGTGGTAAACCAAAACAATCATTTTATTTTATTGGTTTTCAAGATGATCAA GTCATTTATTTAGATCCTCATTTTGTCCAAGAAAGTGTTAATCCAAATTCATTCGATTAT TCAAATACATATAGTGGATGTATACCGCAAAAAATGCCATTTACACAATTAGATCCATCT TTATCAATTGGATTTTATTGTAGAGATCAAGCAAGTTTTGAAGATCTTTGTGATAGATTA TCTGTAATTAATAATTGTGAATTTCCAATCATTTCAGTTTGTCAAAAGTTACCAGATTAT CAAATCGAATGTGAATTGGTTGATGATTATGCAGAGAGTGAAACAACTGAAATGCTTGCA ATCACTATTGCAAATGGTGGAAATAATCATTCTTGTATTCCTGAAAATATTGTTGTTGAT GATGAAGAATTTATAGTTCATCATCATATTCCCTATAATCCAAATAATAATCAAAATAAA ATCAAAATAATAATAATAACAACAACAAAAACA
sequence update	2003. 5. 2
Translated Amino Acid sequence	tvgllvyrpaiesgflsxcsfndmvlerfptnrkykyyyrywlglyvknwsndissi ntslrkygtsk**ECKPHSNYSQVLAWFSDYPSKEHVYGIHQIVNKKQAMEKNNRKQ QILREQVISLNRGGGGSSKGKKKKEKEEEINDNVEEWLAPTRISNILRQLIKFQHLEDLE MYVPTDGVIYKDYINNLCNNSNTHNHYQIIQQQLQHLREQQNIQQNNNYK--- ---TTTTTTTATSSNNTNNQSPPSRIPNGYNNQVFDDESLFDYNTAISSIPPKWKSLIIM IPLKLGADKLNSTYIEKLKLLLKLPQSLGFIGGKPKQSFYFIGFQDDQVIYLDPHFVQES VNPNSFDYSNTYSGCIPQKMPFTQLDPSLSIGFYCRDQASFEDLCDRLSVINNCEFPIIS VCQKLPDYQIECELVDDYAESETTEMLAITIANGGNNHSCIPENIVVDDEEFIVHHHIPY NPNNNQNKIKIIIITTTKT
Translated Amino Acid sequence (All Frames)	Frame A: hcwptgitsyririfixmlqyglvigkishqkiqillqilvgvvcelvkyleh lnifikkmiwyqivrmttfklpsvgmvlsfkgaciwytsnckktsngke*kt tnfkrtsdfiksrrrrkfrkkekrkrrrdk*crgmvssnnfkyfktinistfgrfr nvrsnwchirlykfm***ytslsnysttittfkrttkystk*li--- ---pqqlqqpqqqvviipiinhhhleyqmdiiikylmmnhyltitqllvqyhqsgnhll ylnwvqintqpilknnyynyhkvvllvvnqnnhfillvfkmiksfiililskk vliqihsiiqihivdvyrkkchlhnihlyqldfiveikqvlkifvidylliivnfqsf qfvksyqiiksnvnwlmimqrvkqlkclqsllqmveiiilvflkilllmmknlfiiifp iiqiiikiksk**qqqk Frame B: tvgllvyrpaiesgflsxcsfndmvlerfptnrkykyyyrywlglyvknwsndissi ntslrkygtskECKPHSNYSQVLAWFSDYPSKEHVYGIHQIVNKKQAMEKNNRKQ QILREQVISLNRGGGGSSKGKKKKEKEEEINDNVEEWLAPTRISNILRQLIKFQHLEDLE MYVPTDGVIYKDYINNLCNNSNTHNHYQIIQQQLQHLREQQNIQQNNNYK--- ---hnnynnhsnk*yqsittintkwissi*iiilhsyfnttkveiidyy dtfeigcriklnlykikiiikittkfrfywwtktiilfywfsrsshlfrssfcprk cskfirlfkyiwmytaknaiytirsifinwillrsskfrsliicnlisnhf slskvtrlsnrmig*lcrennnacnhyckwwksflyskycc*riyssssysl sk*sknqnnnnnnnkn Frame C: llaywyidqlnqdfyqxvasmiwfsyrkdfppientnittdigwgcmlrtgqmilaral ikhlykendmvpvnsknvnhiqiiakcwhglviilqrsmymvyikliknkqwkriienn kfenkfhieeeeevlkekrkkkkkkrmimrnglqlefqifdnlnfniwkik ctfqlmvsyikiiiiyviivihiiiiklfnnnyni*ennkifnkiiiin--- ---TTTTTTTATSSNNTNNQSPPSRIPNGYNNQVFDDESLFDYNTAISSIPPKWKSLIIM IPLKLGADKLNSTYIEKLKLLLKLPQSLGFIGGKPKQSFYFIGFQDDQVIYLDPHFVQES VNPNSFDYSNTYSGCIPQKMPFTQLDPSLSIGFYCRDQASFEDLCDRLSVINNCEFPIIS VCQKLPDYQIECELVDDYAESETTEMLAITIANGGNNHSCIPENIVVDDEEFIVHHHIPY NPNNNQNKIKIIIITTTKT
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFC285 (SFC285Q) /CSM/SF/SFC2-D/SFC285Q.Seq.d/ 1871 0.0 VFB823 (VFB823Q) /CSM/VF/VFB8-A/VFB823Q.Seq.d/ 1189 0.0 SSK768 (SSK768Q) /CSM/SS/SSK7-C/SSK768Q.Seq.d/ 735 0.0 SLF150 (SLF150Q) /CSM/SL/SLF1-C/SLF150Q.Seq.d/ 482 e-135 SSD614 (SSD614Q) /CSM/SS/SSD6-A/SSD614Q.Seq.d/ 117 5e-25 VSE391 (VSE391Q) /CSM/VS/VSE3-D/VSE391Q.Seq.d/ 48 4e-04 VHQ147 (VHQ147Q) /CSM/VH/VHQ1-B/VHQ147Q.Seq.d/ 48 4e-04 VHJ856 (VHJ856Q) /CSM/VH/VHJ8-C/VHJ856Q.Seq.d/ 48 4e-04 VHH833 (VHH833Q) /CSM/VH/VHH8-B/VHH833Q.Seq.d/ 48 4e-04 VHG118 (VHG118Q) /CSM/VH/VHG1-A/VHG118Q.Seq.d/ 48 4e-04
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY191018\|AY191018.1 Dictyostelium discoideum autophagy protein 4 (apg4) gene, complete cds. 743 0.0 5 AC116330\|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 743 0.0 16 AC116919\|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 44 3e-20 16 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 40 1e-18 27 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 44 4e-18 24 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 48 1e-17 27 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 8e-17 25 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 46 5e-16 22 AC117076\|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 40 2e-15 21 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 40 3e-15 23
dna update	2004. 9.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY191018_1(AY191018\|pid:none) Dictyostelium discoideum autophagy... 461 e-128 (Q557H7) RecName: Full=Cysteine protease atg4; EC=3.4.2... 461 e-128 AC116330_13(AC116330\|pid:none) Dictyostelium discoideum chromoso... 461 e-128 BC134886_1(BC134886\|pid:none) Danio rerio ATG4 autophagy related... 119 3e-25 (Q640G7) RecName: Full=Cysteine protease ATG4B; EC=3.4.... 112 4e-23 AY069453_1(AY069453\|pid:none) Drosophila melanogaster LD17482 fu... 112 4e-23 (Q684M2) RecName: Full=Cysteine protease ATG4D; EC=3.4.... 112 4e-23 FJ750847_1(FJ750847\|pid:none) Triticum aestivum cysteine protein... 111 6e-23 BC149849_1(BC149849\|pid:none) Bos taurus ATG4 autophagy related ... 111 7e-23 BC121870_1(BC121870\|pid:none) Xenopus tropicalis cysteine endope... 111 7e-23
protein update	2009. 4.14
PSORT	psg: 0.85 gvh: 0.30 alm: 0.45 top: 0.43 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for SFC285 is nuc
5' end seq. ID	SFC285F
5' end seq.	>SFC285F.Seq CACTGTTGGCCTACTGGTATATAGACCAGCTATAGAATCAGGATTTTTATCAGNATGTAG CTTCAATGATATGGTTTAGTTATAGGAAAGATTTCCCACCAATAGAAAATACAAATATTA CTACAGATATTGGTTGGGGTTGTATGTTAAGAACTGGTCAAATGATATTAGCTAGAGCAT TAATTAAACATCTTTATAAAGAAAATGATATGGTACCAGTAAATAGTAAGAATGTAAACC ACATTCAAATTATAGCCAAGTGTTGGCATGGTTTAGTGATTATCCTTCAAAGGAGCATGT ATATGGTATACATCAAATTGTAAATAAAAAACAAGCAATGGAAAAGAATAATAGAAAACA ACAAATTTTAAGAGAACAAGTGATTTCATTAAATCGAGGAGGAGGAGGAAGTTCTAAAGG AAAAAAGAAAAAAGAAAAAGAAGAAGAGATAAATGATAATGTAGAGGAATGGTTAGCTCC AACTAGAATTTCAAATATTTTAAGACAATTAATTAAATTTCAACATTTGGAAGATTTAGA AATGTACGTTCCAACTGATGGTGTCATATATAAAGATTATATAAATAATTTATGTAATAA TAGTAATACACATAATCATTATCAAATTATTCAACAACAATTACAACATTTAAGAGAACA ACAAAATATTCAACAAAATAATAATTATAAATANNNNNNNNNN
Length of 5' end seq.	703
3' end seq. ID	SFC285Z
3' end seq.	>SFC285Z.Seq ----------CCACAACAACTACAACAACCACAGCAACAAGTAGTAATAATACCAATAAT CAATCACCACCATCTAGAATACCAAATGGATATAATAATCAAGTATTTGATGATGAATCA TTATTTGACTATAACACAGCTATTAGTTCAATACCACCAAAGTGGAAATCATTGATTATT ATGATACCTTTGAAATTGGGTGCAGATAAATTAAACTCAACCTATATTGAAAAATTAAAA TTATTATTAAAATTACCACAAAGTTTAGGTTTTATTGGTGGTAAACCAAAACAATCATTT TATTTTATTGGTTTTCAAGATGATCAAGTCATTTATTTAGATCCTCATTTTGTCCAAGAA AGTGTTAATCCAAATTCATTCGATTATTCAAATACATATAGTGGATGTATACCGCAAAAA ATGCCATTTACACAATTAGATCCATCTTTATCAATTGGATTTTATTGTAGAGATCAAGCA AGTTTTGAAGATCTTTGTGATAGATTATCTGTAATTAATAATTGTGAATTTCCAATCATT TCAGTTTGTCAAAAGTTACCAGATTATCAAATCGAATGTGAATTGGTTGATGATTATGCA GAGAGTGAAACAACTGAAATGCTTGCAATCACTATTGCAAATGGTGGAAATAATCATTCT TGTATTCCTGAAAATATTGTTGTTGATGATGAAGAATTTATAGTTCATCATCATATTCCC TATAATCCAAATAATAATCAAAATAAAATCAAAATAATAATAATAACAACAACAAAAACA
Length of 3' end seq.	770
Connected seq. ID	SFC285P
Connected seq.	>SFC285P.Seq CACTGTTGGCCTACTGGTATATAGACCAGCTATAGAATCAGGATTTTTATCAGNATGTAG CTTCAATGATATGGTTTAGTTATAGGAAAGATTTCCCACCAATAGAAAATACAAATATTA CTACAGATATTGGTTGGGGTTGTATGTTAAGAACTGGTCAAATGATATTAGCTAGAGCAT TAATTAAACATCTTTATAAAGAAAATGATATGGTACCAGTAAATAGTAAGAATGTAAACC ACATTCAAATTATAGCCAAGTGTTGGCATGGTTTAGTGATTATCCTTCAAAGGAGCATGT ATATGGTATACATCAAATTGTAAATAAAAAACAAGCAATGGAAAAGAATAATAGAAAACA ACAAATTTTAAGAGAACAAGTGATTTCATTAAATCGAGGAGGAGGAGGAAGTTCTAAAGG AAAAAAGAAAAAAGAAAAAGAAGAAGAGATAAATGATAATGTAGAGGAATGGTTAGCTCC AACTAGAATTTCAAATATTTTAAGACAATTAATTAAATTTCAACATTTGGAAGATTTAGA AATGTACGTTCCAACTGATGGTGTCATATATAAAGATTATATAAATAATTTATGTAATAA TAGTAATACACATAATCATTATCAAATTATTCAACAACAATTACAACATTTAAGAGAACA ACAAAATATTCAACAAAATAATAATTATAAATA----------CCACAACAACTACAACA ACCACAGCAACAAGTAGTAATAATACCAATAATCAATCACCACCATCTAGAATACCAAAT GGATATAATAATCAAGTATTTGATGATGAATCATTATTTGACTATAACACAGCTATTAGT TCAATACCACCAAAGTGGAAATCATTGATTATTATGATACCTTTGAAATTGGGTGCAGAT AAATTAAACTCAACCTATATTGAAAAATTAAAATTATTATTAAAATTACCACAAAGTTTA GGTTTTATTGGTGGTAAACCAAAACAATCATTTTATTTTATTGGTTTTCAAGATGATCAA GTCATTTATTTAGATCCTCATTTTGTCCAAGAAAGTGTTAATCCAAATTCATTCGATTAT TCAAATACATATAGTGGATGTATACCGCAAAAAATGCCATTTACACAATTAGATCCATCT TTATCAATTGGATTTTATTGTAGAGATCAAGCAAGTTTTGAAGATCTTTGTGATAGATTA TCTGTAATTAATAATTGTGAATTTCCAATCATTTCAGTTTGTCAAAAGTTACCAGATTAT CAAATCGAATGTGAATTGGTTGATGATTATGCAGAGAGTGAAACAACTGAAATGCTTGCA ATCACTATTGCAAATGGTGGAAATAATCATTCTTGTATTCCTGAAAATATTGTTGTTGAT GATGAAGAATTTATAGTTCATCATCATATTCCCTATAATCCAAATAATAATCAAAATAAA ATCAAAATAATAATAATAACAACAACAAAAACA
Length of connected seq.	1463
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas