NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC268
Library SF
(Link to library)
Clone ID SFC268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SFC268E
(Link to Original site)
Representative DNA sequence 
>SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/
ACTGTTGGCCTACTGGNAAAATTTTTATTTTTTATACAACCAAAACTATATAAATAAATA
TATATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACA
ACAACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATG
GGCACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGC
ATCAATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATC
AACATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGT
TAAATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATC
AACCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAA
GAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCA
ATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCAT
TATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATT
AGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACC
ACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGGCTCCAACCGAACAATCTGTACCACA
ATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAAT
CGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAAT
CATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAA
GGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTC
TCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGA
AAATAATAAAATCTTTGATAAATTCAAGTACTCTTAGGTTTA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
llaywxnfyflynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSW
APVVTGKPQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKV
KSQEAHRLKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQ
SPVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSP
PVSSTTPVAPVAPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQI
IQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHE
NNKIFDKFKYS*v
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxkflffiqpklyk*iyiniiti*nvltrrfri*rtttfk*sitr*irwcklkkim
gtscnr*ttnt*cts**ficinfnfr*apritinnniitiniirc***fnlsrcnr*g*s
*itrstpfekdgsfn*rr*inrsyssiyfikfiilihhlke**qskpckgnq**qplais
its*ssqlnii*efsr*cfhyeqr*fsyl*reneargkeirkmgfkd*ltncyltkhylt
tsl*yhsgctsgsnrticttisilnwccrlcqsks*qspnryyptip*syrslc*ir*tn
hskenl*s*ychlyshgfskgicklwydslfnypnvfrylskcw*trwccq*is*rhcsr
k**nl**iqvllgl


Frame B:
llaywxnfyflynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSW
APVVTGKPQTHSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKV
KSQEAHRLKKMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQ
SPVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSP
PVSSTTPVAPVAPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQI
IQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHE
NNKIFDKFKYS*v


Frame C:
cwptgkififyttkti*iniykynynlkcthqki*niennnv*vkhykvn*vvqaqenhg
hql*qvnhkhivhqlivhlhqfqfqisttnhhqqqhhhhqhhqvliivqsiqvqslrikl
nhkkhtv*krwvfqlkkmnqplifqhilh*ihhphppsqrviaikalqrkpvvttscnin
hqle*paqhhlri*sivlpl*ttliliplkrk*skrqrd*kdgv*rlthqllphqalphh
qslvplrlhqwlqpnnlyhnlhsqlvlpslsikviaisqsllpnnslivsfsllnplnks
fkrkplivilsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn*lktlltk
iikslinsstlrf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1610   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1542   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1530   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1316   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1316   0.0
AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/                       1205   0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                       1181   0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                       1179   0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                       1164   0.0
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                       1152   0.0
own update 2002.10. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.  1556   0.0    3
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    36   0.69   9
BX525847|BX525847.1 RZPD Mus musculus cDNA clone IMAGp998N144677 = IMAGE:1907917 5' EST.    40   0.70   2
AC122688|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   1.0    1
AP006101|AP006101.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181.    36   1.8    11
BZ340037|BZ340037.1 ic36d01.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ic36d01 5', DNA sequence.    42   3.2    2
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44   4.1    1
AC094024|AC094024.7 Rattus norvegicus clone CH230-5O11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   4.1    1
AF079445|AF079445.1 Dictyostelium discoideum TipC (tipC) gene, complete cds.    44   4.1    1
AC114441|AC114441.5 Rattus norvegicus clone CH230-116K24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   4.1    1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   523   e-147
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom...    37   1.7
CP001408_431(CP001408|pid:none) Burkholderia pseudomallei MSHR34...    36   2.8
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom...    35   6.3
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   6.3
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ...    34   8.2
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...    34   8.2
protein update 2009. 7. 3
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SFC268 is cyt
5' end seq. ID SFC268F
5' end seq. 
>SFC268F.Seq
ACTGTTGGCCTACTGGNAAAATTTTTATTTTTTATACAACCAAAACTATATAAATAAATA
TATATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACA
ACAACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATG
GGCACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGC
ATCAATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATC
AACATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGT
TAAATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATC
AACCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAA
GAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCA
ATCACCAGTTAGAGTAGC----------
Length of 5' end seq. 558
3' end seq. ID SFC268Z
3' end seq. 
>SFC268Z.Seq
----------CCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACC
ATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTG
CAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGT
GCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCA
AAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACT
ACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGGCTCCAACCGAACAATCT
GTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAAT
CTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTT
AAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGAT
TTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTC
GATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACT
GCTCACGAAAATAATAAAATCTTTGATAAATTCAAGTACTCTTAGGTTTA
Length of 3' end seq. 700
Connected seq. ID SFC268P
Connected seq. 
>SFC268P.Seq
ACTGTTGGCCTACTGGNAAAATTTTTATTTTTTATACAACCAAAACTATATAAATAAATA
TATATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACA
ACAACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATG
GGCACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGC
ATCAATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATC
AACATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGT
TAAATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATC
AACCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAA
GAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCA
ATCACCAGTTAGAGTAGC----------CCGCTCATATTCCAGCATATACTTCATTAAAT
TCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACC
AGTAGTAACAACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCT
GAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAG
AAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACT
GCTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTG
GCTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTC
AATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTT
CTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTC
ATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCA
ACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAAT
GAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATAAATTCAAGTACTCT
TAGGTTTA
Length of connected seq. 1258
Full length Seq ID SFC268E
Full length Seq. 
>SFC268E.Seq
ACTGTTGGCCTACTGGNAAAATTTTTATTTTTTATACAACCAAAACTATATAAATAAATA
TATATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACA
ACAACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATG
GGCACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGC
ATCAATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATC
AACATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGT
TAAATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATC
AACCGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAA
GAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCA
ATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCAT
TATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATT
AGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACC
ACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGGCTCCAACCGAACAATCTGTACCACA
ATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAAT
CGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAAT
CATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAA
GGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTC
TCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGA
AAATAATAAAATCTTTGATAAATTCAAGTACTCTTAGGTTTA
Length of full length seq. 1122