SFC266
Library SF
(Link to library)
Clone ID SFC266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16051-1
Original site URL
Representative seq. ID SFC266Z
(Link to Original site)
Representative DNA sequence
>SFC266 (SFC266Q) /CSM/SF/SFC2-C/SFC266Q.Seq.d/
XXXXXXXXXXGATAAAATCNCTGGTGAACCATCATTGGGNGCTTCTNGTTTANCAANTGG
NGTTTGTGGNGCCCCAATTCGTTCTNCTGCTTTANATTGGGNTTCAACAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---IKSLVNHHWXLLVXQXXFVXPQFVLLLXIGXQQ


Translated Amino Acid sequence (All Frames)
Frame A:
---IKSLVNHHWXLLVXQXXFVXPQFVLLLXIGXQQ


Frame B:
---*nxw*tiigxfxfxxwxlwxpnsfxcfxlgfn


Frame C:
---kixgepslgasxlxxgvcgapirsxalxwxst


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC266 (SFC266Q) /CSM/SF/SFC2-C/SFC266Q.Seq.d/ 139 9e-33
VSH415 (VSH415Q) /CSM/VS/VSH4-A/VSH415Q.Seq.d/ 131 2e-30
VSG259 (VSG259Q) /CSM/VS/VSG2-C/VSG259Q.Seq.d/ 131 2e-30
VFK753 (VFK753Q) /CSM/VF/VFK7-C/VFK753Q.Seq.d/ 131 2e-30
VFI237 (VFI237Q) /CSM/VF/VFI2-B/VFI237Q.Seq.d/ 131 2e-30
VFF567 (VFF567Q) /CSM/VF/VFF5-C/VFF567Q.Seq.d/ 131 2e-30
VFD227 (VFD227Q) /CSM/VF/VFD2-B/VFD227Q.Seq.d/ 131 2e-30
VFC512 (VFC512Q) /CSM/VF/VFC5-A/VFC512Q.Seq.d/ 131 2e-30
VFA642 (VFA642Q) /CSM/VF/VFA6-B/VFA642Q.Seq.d/ 131 2e-30
SSH148 (SSH148Q) /CSM/SS/SSH1-B/SSH148Q.Seq.d/ 131 2e-30

own update 2002.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 131 2e-27 1
X02917|X02917.1 Dictyostelium discoideum gene for dihydroorotate dehydrogenase. 123 5e-25 1

dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A23559(A23559)dihydroorotate oxidase (EC 1.3.3.1) - slime mold ... 54 1e-06
(P07670) RecName: Full=Dihydroorotate dehydrogenase; Sh... 54 1e-06
X02917_1(X02917|pid:none) Dictyostelium discoideum gene for dihy... 52 5e-06

protein update 2009. 1. 6
PSORT

psg: 0.95 gvh: 0.58 alm: 0.36 top: 0.43 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
28.0 %: nuclear
16.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SFC266 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC266Z
3' end seq.
>SFC266Z.Seq
----------GATAAAATCNCTGGTGAACCATCATTGGGNGCTTCTNGTTTANCAANTGG
NGTTTGTGGNGCCCCAATTCGTTCTNCTGCTTTANATTGGGNTTCAACAG
Length of 3' end seq. 100
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -