>SFC262 (SFC262Q) /CSM/SF/SFC2-C/SFC262Q.Seq.d/
CACTGTTGGCCTACTGGATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTG
TTTTTAATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAA
ATTTAAAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATA
ATATTTTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAG
CCAAAGGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTATTGATCAATGTAATAATTTCT
TTAGAAATTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTA
AATTTTATACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCA
AAGATGCACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATA
CAGATTTTTTACAACTCTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTG
AAAGTAACATCACTCACATTAATCCAGAACAATCTTCAATCGCCATCAAAGATATTCTTT
GTTACTTTTACTATTCTGGTATCATTTTXXXXXXXXXXTGTTACTTTTACTATTCTGGTA
TCATTTTCACTGCTTTTAAGAAATATAAAAAAGCAATTGAAGCTTTTAAATTTGTTATTA
CTGCACCAGCATCAGCATTAAGTGCAATTACAGTTGAAGCTTATAAAAAATATTTAATTG
TATATTTAATTCAATTTGGTTCAGTTCAACATTTCCCAAAATGTACACCAGCAGTTGTTC
AAAGAAATATTAAATCTCATTGTAAACCATACACAGAATTTGTTCAATCCTTTTCAAATG
GTAATATAAATGATATTATGAATAAAGCTTCATCTGGTGCTGAATTCTTCCAAAAGGATA
GCAACTGGGGTTTAGTTAAACTTTCAATTAAATCAACCTATCGTAGAAATATCAAAAAAC
TCACTCAAACTTTTATGACTCTTTCAATTAATGATATTGCTGAAAAGGTTTCTCTTCCAA
AAGCAAAAGCTGAACAATTCGTTTTAAAGATGATTGAAGAAGGTGAAATTTTTGCAACTA
TTAATCAAAAAGATGGTATGGTTACTTTTGATGAATGTTTTGAAGATTTTAGTGGTCCAA
CTATCTTAAATGATTTGGATCGTAATATCAACAATATTGTTGGTTTAGAATCAAAGATTA
AAGAGATGGATGAAAAGATTTCATTAAGTAATAATTATTTAAAGAAATTAGCTTCGGAAA
GAATACAGGTCAATTATCTCAATAGAAGATCCAAGGAAGATATCAGCTAAAAAAATACTT
CAAT

LLAYWINNQNFKYFNYFVFVFNTHKMDSFVLDAQNPNPKNLKNLLKYEEQLERQHVSLDN
ILGALDVRNHSLGQLLVLKAKGSDQGKNRSVFIDQCNNFFRNCNVEQVRLAPAQLSQLSK
FYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCILSKCYHQALPLIE
SNITHINPEQSSIAIKDILCYFYYSGII---

---CYFYYSGIIFTAFKKYKKAIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQ
HFPKCTPAVVQRNIKSHCKPYTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSI
KSTYRRNIKKLTQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEEGEIFATINQKDGMVTF
DECFEDFSGPTILNDLDRNINNIVGLESKIKEMDEKISLSNNYLKKLASERIQVNYLNRR
SKEDIS*knts

Frame A:
hcwptglitkisnistilylflihikwihly*mhktqtqki*kiy*nmknnskdnmsh*i
if*aplmseiih*vnf*y*kpkavikvkivlfllinviisleivmlnkld*hqlnyhnlv
nfiqkhymn*snqlevlqyskmhlifypiinqqpllhqfiqifynsvsfqnviikhsh*l
kvtsltliqnnlqspskiffvtftilvsf---

---CYFYYSGIIFTAFKKYKKAIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQ
HFPKCTPAVVQRNIKSHCKPYTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSI
KSTYRRNIKKLTQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEEGEIFATINQKDGMVTF
DECFEDFSGPTILNDLDRNINNIVGLESKIKEMDEKISLSNNYLKKLASERIQVNYLNRR
SKEDIS*knts

Frame B:
tvglld**pkfqifqlfcicf*yt*ngficirctkpkpkkfkkfiki*rttrkttclir*
yfrrp*cqksfirstfsiksqrq*sr*ksfcfy*sm**fl*kl*c*ts*istssiitt**
ilyrsii*ikatn*rccstqrct*yfir**tnnhsytnsyrffttlypfkmlssstpin*
k*hhsh*srtifnrhqryslllllfwyhf---

---vtftilvsfslllrnikkqlkllnllllhqhqh*vqlqlklikni*lyi*fnlvqfn
isqnvhqqlfkeilnlivnhtqnlfnpfqmvi*mil*iklhlvlnsskriatgv*lnfql
nqpiveisknslkll*lfqlmillkrflfqkqklnnsf*r*lkkvkflqllikkmvwlll
mnvlkilvvqls*miwivistillv*nqrlkrwmkrfh*viii*rn*lrkeyrsiisied
prkisakkilq

Frame C:
LLAYWINNQNFKYFNYFVFVFNTHKMDSFVLDAQNPNPKNLKNLLKYEEQLERQHVSLDN
ILGALDVRNHSLGQLLVLKAKGSDQGKNRSVFIDQCNNFFRNCNVEQVRLAPAQLSQLSK
FYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCILSKCYHQALPLIE
SNITHINPEQSSIAIKDILCYFYYSGII---

---llllfwyhfhcf*ei*ksn*sf*icyyctsisikcnys*sl*kifncifnsiwfsst
fpkmytsscskky*isl*tihricsilfkw*yk*yye*sfiwc*ilpkg*qlgfs*tfn*
inls*kyqkthsnfydsfn**yc*kgfssksks*tirfkdd*rr*nfcny*skrwygyf*
*mf*rf*wsnylk*fgs*yqqycwfrikd*rdg*kdfik**lfkeisfgkntgqlsq*ki
qgryqlkkyfn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC262 (SFC262Q) /CSM/SF/SFC2-C/SFC262Q.Seq.d/                       2375   0.0
SFG708 (SFG708Q) /CSM/SF/SFG7-A/SFG708Q.Seq.d/                       1447   0.0
SFE815 (SFE815Q) /CSM/SF/SFE8-A/SFE815Q.Seq.d/                       1447   0.0
AFH628 (AFH628Q) /CSM/AF/AFH6-B/AFH628Q.Seq.d/                       1441   0.0
VFH852 (VFH852Q) /CSM/VF/VFH8-C/VFH852Q.Seq.d/                       1433   0.0
SFK544 (SFK544Q) /CSM/SF/SFK5-B/SFK544Q.Seq.d/                       1425   0.0
VFI138 (VFI138Q) /CSM/VF/VFI1-B/VFI138Q.Seq.d/                       1419   0.0
CFC770 (CFC770Q) /CSM/CF/CFC7-C/CFC770Q.Seq.d/                       1388   0.0
AFN278 (AFN278Q) /CSM/AF/AFN2-D/AFN278Q.Seq.d/                       1384   0.0
VFD429 (VFD429Q) /CSM/VF/VFD4-B/VFD429Q.Seq.d/                       1366   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    38   4e-14  19
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   7e-10  17
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    38   1e-09  18
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   2e-07  29
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-06  17
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3.    36   2e-06  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   4e-06  25
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   7e-06  25
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    36   8e-06  21
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   8e-06  21

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT043769_1(BT043769|pid:none) Salmo salar clone HM6_1193 COP9 co...   266   1e-69
(Q5ZJF1) RecName: Full=COP9 signalosome complex subunit 3;      ...   263   8e-69
BT075168_1(BT075168|pid:none) Osmerus mordax clone omor-rgc-505-...   263   8e-69
BT046088_1(BT046088|pid:none) Salmo salar clone ssal-rgf-541-144...   263   8e-69
(Q6P2U9) RecName: Full=COP9 signalosome complex subunit 3;      ...   263   1e-68
BC045415_1(BC045415|pid:none) Danio rerio COP9 constitutive phot...   263   1e-68
(Q28IV6) RecName: Full=COP9 signalosome complex subunit 3;      ...   258   3e-67
AK058565_1(AK058565|pid:none) Oryza sativa Japonica Group cDNA c...   248   5e-64
BT065643_1(BT065643|pid:none) Zea mays full-length cDNA clone ZM...   241   3e-62
EU963506_1(EU963506|pid:none) Zea mays clone 263419 COP9 signalo...   234   5e-60

 psg: 0.77  gvh: 0.27  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SFC262 is cyt

>SFC262F.Seq
CACTGTTGGCCTACTGGATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTG
TTTTTAATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAA
ATTTAAAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATA
ATATTTTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAG
CCAAAGGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTATTGATCAATGTAATAATTTCT
TTAGAAATTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTA
AATTTTATACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCA
AAGATGCACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATA
CAGATTTTTTACAACTCTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTG
AAAGTAACATCACTCACATTAATCCAGAACAATCTTCAATCGCCATCAAAGATATTCTTT
GTTACTTTTACTATTCTGGTATCATTTT----------

>SFC262Z.Seq
----------TGTTACTTTTACTATTCTGGTATCATTTTCACTGCTTTTAAGAAATATAA
AAAAGCAATTGAAGCTTTTAAATTTGTTATTACTGCACCAGCATCAGCATTAAGTGCAAT
TACAGTTGAAGCTTATAAAAAATATTTAATTGTATATTTAATTCAATTTGGTTCAGTTCA
ACATTTCCCAAAATGTACACCAGCAGTTGTTCAAAGAAATATTAAATCTCATTGTAAACC
ATACACAGAATTTGTTCAATCCTTTTCAAATGGTAATATAAATGATATTATGAATAAAGC
TTCATCTGGTGCTGAATTCTTCCAAAAGGATAGCAACTGGGGTTTAGTTAAACTTTCAAT
TAAATCAACCTATCGTAGAAATATCAAAAAACTCACTCAAACTTTTATGACTCTTTCAAT
TAATGATATTGCTGAAAAGGTTTCTCTTCCAAAAGCAAAAGCTGAACAATTCGTTTTAAA
GATGATTGAAGAAGGTGAAATTTTTGCAACTATTAATCAAAAAGATGGTATGGTTACTTT
TGATGAATGTTTTGAAGATTTTAGTGGTCCAACTATCTTAAATGATTTGGATCGTAATAT
CAACAATATTGTTGGTTTAGAATCAAAGATTAAAGAGATGGATGAAAAGATTTCATTAAG
TAATAATTATTTAAAGAAATTAGCTTCGGAAAGAATACAGGTCAATTATCTCAATAGAAG
ATCCAAGGAAGATATCAGCTAAAAAAATACTTCAAT

>SFC262P.Seq
CACTGTTGGCCTACTGGATTAATAACCAAAATTTCAAATATTTCAACTATTTTGTATTTG
TTTTTAATACACATAAAATGGATTCATTTGTATTAGATGCACAAAACCCAAACCCAAAAA
ATTTAAAAAATTTATTAAAATATGAAGAACAACTCGAAAGACAACATGTCTCATTAGATA
ATATTTTAGGCGCCCTTGATGTCAGAAATCATTCATTAGGTCAACTTTTAGTATTAAAAG
CCAAAGGCAGTGATCAAGGTAAAAATCGTTCTGTTTTTATTGATCAATGTAATAATTTCT
TTAGAAATTGTAATGTTGAACAAGTTAGATTAGCACCAGCTCAATTATCACAACTTAGTA
AATTTTATACAGAAGCATTATATGAATTAAAGCAACCAATTAGAGGTGTTGCAGTACTCA
AAGATGCACTTAATATTTTATCCGATAATAAACCAACAACCACTCTTACACCAATTCATA
CAGATTTTTTACAACTCTGTATCCTTTCAAAATGTTATCATCAAGCACTCCCATTAATTG
AAAGTAACATCACTCACATTAATCCAGAACAATCTTCAATCGCCATCAAAGATATTCTTT
GTTACTTTTACTATTCTGGTATCATTTT----------TGTTACTTTTACTATTCTGGTA
TCATTTTCACTGCTTTTAAGAAATATAAAAAAGCAATTGAAGCTTTTAAATTTGTTATTA
CTGCACCAGCATCAGCATTAAGTGCAATTACAGTTGAAGCTTATAAAAAATATTTAATTG
TATATTTAATTCAATTTGGTTCAGTTCAACATTTCCCAAAATGTACACCAGCAGTTGTTC
AAAGAAATATTAAATCTCATTGTAAACCATACACAGAATTTGTTCAATCCTTTTCAAATG
GTAATATAAATGATATTATGAATAAAGCTTCATCTGGTGCTGAATTCTTCCAAAAGGATA
GCAACTGGGGTTTAGTTAAACTTTCAATTAAATCAACCTATCGTAGAAATATCAAAAAAC
TCACTCAAACTTTTATGACTCTTTCAATTAATGATATTGCTGAAAAGGTTTCTCTTCCAA
AAGCAAAAGCTGAACAATTCGTTTTAAAGATGATTGAAGAAGGTGAAATTTTTGCAACTA
TTAATCAAAAAGATGGTATGGTTACTTTTGATGAATGTTTTGAAGATTTTAGTGGTCCAA
CTATCTTAAATGATTTGGATCGTAATATCAACAATATTGTTGGTTTAGAATCAAAGATTA
AAGAGATGGATGAAAAGATTTCATTAAGTAATAATTATTTAAAGAAATTAGCTTCGGAAA
GAATACAGGTCAATTATCTCAATAGAAGATCCAAGGAAGATATCAGCTAAAAAAATACTT
CAAT