SFC252
Library SF
(Link to library)
Clone ID SFC252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFC252P
(Link to Original site)
Representative DNA sequence
>SFC252 (SFC252Q) /CSM/SF/SFC2-C/SFC252Q.Seq.d/
ACTGTTGGCCTACTGGTTTAATCCAGGATAATGGTGATAAGTTTGTATCATCTTATCATA
AGACAAACTCTGATTTTGGTCCATCAGGTAGTTGTGCAATTTATAAACTTTCAAGTGGTA
TCATTACAACACATGTTAACTTTAATGATGTATTTGGTAAATCCTATTGTGGTGGTTATG
CACATTACTTTGATTTCCGGGAAATATCAACTGCTGGTCCATTAGTTGGTAAAGCAAGTC
TTGGTCAAATGACCTATTACAACANGAAACTNTATGTAACCAATCTTGGAAAGAATGAAA
TTTTGNCTGTACCAATTTATXXXXXXXXXXAAAAATCACTCACTGGTCTTAGATATGGTC
CAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTT
TTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAG
CATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACT
CTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATG
GTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAG
TTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAA
TCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATT
CAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTG
TTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAA
ATACAAATAGTGATGCTTTCTTATCAACTGTTNATAATGTTTATGTCACTTCTTTTACTT
CTTCTGATGCTGGGGTTATATTTTAAGGTGTTCATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
CWPTGLIQDNGDKFVSSYHKTNSDFGPSGSCAIYKLSSGIITTHVNFNDVFGKSYCGGYA
HYFDFREISTAGPLVGKASLGQMTYYNXKLYVTNLGKNEILXVPIY---

---KSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRW
YNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGN
GIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGS
SITMRNADPTHPNTNSDAFLSTVXNVYVTSFTSSDAGVIF*gvh


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllv*srimvislyhliirqtlilvhqvvvqfinfqvvslqhmltlmmylvnpivvvm
hitlisgkyqllvh*lvkqvlvk*pittxnxm*pilermkfxlyqf---

---knhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfv
gimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mv
mvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklv
lplq*emliqliqiqivmlsyqlximfmsllllllmlglyfkvfi

Frame B:
llaywfnpg*w**vciils*dkl*fwsir*lcnl*tfkwyhyntc*l**ciw*illwwlc
tll*fpgnincwsisw*skswsndllqxetxcnqswke*nfxctnl---

---kithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnsl
v*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*
wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswf
fhynekc*snsskyk**cflincx*clchffyff*cwgyilrcs

Frame C:
CWPTGLIQDNGDKFVSSYHKTNSDFGPSGSCAIYKLSSGIITTHVNFNDVFGKSYCGGYA
HYFDFREISTAGPLVGKASLGQMTYYNXKLYVTNLGKNEILXVPIY---

---KSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRW
YNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGN
GIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGS
SITMRNADPTHPNTNSDAFLSTVXNVYVTSFTSSDAGVIF*gvh

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC252 (SFC252Q) /CSM/SF/SFC2-C/SFC252Q.Seq.d/ 1891 0.0
SHB816 (SHB816Q) /CSM/SH/SHB8-A/SHB816Q.Seq.d/ 1314 0.0
SHB407 (SHB407Q) /CSM/SH/SHB4-A/SHB407Q.Seq.d/ 1314 0.0
SHB323 (SHB323Q) /CSM/SH/SHB3-A/SHB323Q.Seq.d/ 1314 0.0
SHB169 (SHB169Q) /CSM/SH/SHB1-C/SHB169Q.Seq.d/ 1314 0.0
SHB143 (SHB143Q) /CSM/SH/SHB1-B/SHB143Q.Seq.d/ 1314 0.0
SHB113 (SHB113Q) /CSM/SH/SHB1-A/SHB113Q.Seq.d/ 1314 0.0
CHO744 (CHO744Q) /CSM/CH/CHO7-B/CHO744Q.Seq.d/ 1314 0.0
CHO365 (CHO365Q) /CSM/CH/CHO3-C/CHO365Q.Seq.d/ 1314 0.0
CHN867 (CHN867Q) /CSM/CH/CHN8-C/CHN867Q.Seq.d/ 1314 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence. 48 0.23 1
AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10. 38 0.33 10
AC114012|AC114012.4 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces. 36 0.49 2
AC105770|AC105770.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces. 36 0.49 2
AC008446|AC008446.5 Homo sapiens chromosome 5 clone CTC-340A15, complete sequence. 42 0.57 6
BD186774|BD186774.1 Nucleic acids isolated from neuroblastoma. 46 0.93 1
BD099032|BD099032.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 46 0.93 1
BD097439|BD097439.1 Nucleic acid sequences characterized by their enhanced expression in good prognostic human neuroblastoma upon comparison between good prognostic human neuroblastoma and poor prognostic human neuroblastoma. 46 0.93 1
BD083792|BD083792.1 Nucleic acid sequence characterized in that expression is potentiated in human neuroblastoma with good prognosis, in comparion between human neuroblastoma with good prognosis and human neuroblastoma with bad prognosis. 46 0.93 1
BD019094|BD019094.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 46 0.93 1
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 76 2e-12
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 63 1e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 61 7e-08
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 59 3e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 53 2e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 53 2e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 53 2e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 53 2e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 53 2e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 53 2e-05
protein update 2009. 5.22
PSORT

psg: 0.75 gvh: 0.40 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SFC252 is cyt

5' end seq. ID SFC252F
5' end seq.
>SFC252F.Seq
ACTGTTGGCCTACTGGTTTAATCCAGGATAATGGTGATAAGTTTGTATCATCTTATCATA
AGACAAACTCTGATTTTGGTCCATCAGGTAGTTGTGCAATTTATAAACTTTCAAGTGGTA
TCATTACAACACATGTTAACTTTAATGATGTATTTGGTAAATCCTATTGTGGTGGTTATG
CACATTACTTTGATTTCCGGGAAATATCAACTGCTGGTCCATTAGTTGGTAAAGCAAGTC
TTGGTCAAATGACCTATTACAACANGAAACTNTATGTAACCAATCTTGGAAAGAATGAAA
TTTTGNCTGTACCAATTTAT----------
Length of 5' end seq. 320
3' end seq. ID SFC252Z
3' end seq.
>SFC252Z.Seq
----------AAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTT
GATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGT
CGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGT
TGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCA
AATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCA
GTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGT
AATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTAT
GGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTT
GAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGT
TCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTC
TTATCAACTGTTNATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATA
TTTTAAGGTGTTCATT
Length of 3' end seq. 666
Connected seq. ID SFC252P
Connected seq.
>SFC252P.Seq
ACTGTTGGCCTACTGGTTTAATCCAGGATAATGGTGATAAGTTTGTATCATCTTATCATA
AGACAAACTCTGATTTTGGTCCATCAGGTAGTTGTGCAATTTATAAACTTTCAAGTGGTA
TCATTACAACACATGTTAACTTTAATGATGTATTTGGTAAATCCTATTGTGGTGGTTATG
CACATTACTTTGATTTCCGGGAAATATCAACTGCTGGTCCATTAGTTGGTAAAGCAAGTC
TTGGTCAAATGACCTATTACAACANGAAACTNTATGTAACCAATCTTGGAAAGAATGAAA
TTTTGNCTGTACCAATTTAT----------AAAAATCACTCACTGGTCTTAGATATGGTC
CAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTT
TTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAG
CATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACT
CTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATG
GTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAG
TTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAA
TCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATT
CAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTG
TTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAA
ATACAAATAGTGATGCTTTCTTATCAACTGTTNATAATGTTTATGTCACTTCTTTTACTT
CTTCTGATGCTGGGGTTATATTTTAAGGTGTTCATT
Length of connected seq. 986
Full length Seq ID -
Full length Seq. -
Length of full length seq. -