>SFC245 (SFC245Q) /CSM/SF/SFC2-B/SFC245Q.Seq.d/
XXXXXXXXXXTTAGATCATACATATCAAGGATCGTGATAGAATTTATCAATTAAATAATA
AAGATACTCAACAGCAACAGCANCANCAGCAACAACAAGATAATGATGAAGATATTAAAG
TTTCAACTTCATCAAGTAAAAAATATCANCAACAAGAAAAAGAAGAAAAAGAAAAAGAAG
ATAAAGATAATGGTTTTATGAAATTACATGCAGATGCTTGGGAAATTTATTTATGGTTAA
AATCAATGCCAGGATTTCCAAGAGATCAATTTATTTTACAAAGAAAAAATCAATTATTTA
AATTGGCAATTTATATTGGTTCATTAGCAAATCCTTTAATTTCTGCAAAGGATAAAGAAG
TTGTTTCAATTTCAATGGAAGCATTCGACGAAGCATTACATATTGCTGATATCACTCAAA
ATAAAGAATACTTTTGTGCTGCCACTGCTCATAAATCATCTGTTGTTTATCGTACTCTTC
CAGAGGATGAACGTGCCAAACTTTTCAAATCACTTGTTGATGTTGAACAATCTATGAAAC
CTGTAAATAGTGAAATTAGAGATTTAATTCAATCAATAGAAAATAAAGATCCATCACTTT
TCCCTNAGAAAAAAGAACAAGAAGATAAAGAAAAAGANAAAAATNAAAAAAGAAAA

---*IIHIKDRDRIYQLNNKDTQQQQXXQQQQDNDEDIKVSTSSSKKYXQQEKEEKEKED
KDNGFMKLHADAWEIYLWLKSMPGFPRDQFILQRKNQLFKLAIYIGSLANPLISAKDKEV
VSISMEAFDEALHIADITQNKEYFCAATAHKSSVVYRTLPEDERAKLFKSLVDVEQSMKP
VNSEIRDLIQSIENKDPSLFPXKKEQEDKEKXKNXKRK

Frame A:
---*IIHIKDRDRIYQLNNKDTQQQQXXQQQQDNDEDIKVSTSSSKKYXQQEKEEKEKED
KDNGFMKLHADAWEIYLWLKSMPGFPRDQFILQRKNQLFKLAIYIGSLANPLISAKDKEV
VSISMEAFDEALHIADITQNKEYFCAATAHKSSVVYRTLPEDERAKLFKSLVDVEQSMKP
VNSEIRDLIQSIENKDPSLFPXKKEQEDKEKXKNXKRK


Frame B:
---rsyisriviefin*iikilnsnsxxsnnkimmkilkfqlhqvknixnkkkkkkkkki
kimvl*nymqmlgkfiyg*nqcqdfqeinlfykekinylnwqfilvh*qil*flqrikkl
fqfqwkhstkhyillislkikntfvlpllinhllfivlfqrmnvpnfsnhllmlnnl*nl
*ivklei*fnq*kikihhfslrkknkkikkkxkxkke


Frame C:
---dhtyqgs**nlsik**rystataxxattr***ry*sfnfik*kisxtrkrrkrkrr*
r*wfyeitcrclgnlfmvkinariskrsiyftkkksii*ignlywfisksfnfckg*rsc
fnfngsirrsityc*yhsk*rillcchcs*iicclsyssrg*tcqtfqitc*c*tiyetc
k**n*rfnsinrk*rsitfpxekrtrr*rkrxkxkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE109 (VFE109Q) /CSM/VF/VFE1-A/VFE109Q.Seq.d/                        829   0.0
SSH376 (SSH376Q) /CSM/SS/SSH3-D/SSH376Q.Seq.d/                        829   0.0
SFF165 (SFF165Q) /CSM/SF/SFF1-C/SFF165Q.Seq.d/                        829   0.0
SFC245 (SFC245Q) /CSM/SF/SFC2-B/SFC245Q.Seq.d/                        829   0.0
AFE573 (AFE573Q) /CSM/AF/AFE5-D/AFE573Q.Seq.d/                        829   0.0
CHC134 (CHC134Q) /CSM/CH/CHC1-B/CHC134Q.Seq.d/                        821   0.0
CFD181 (CFD181Q) /CSM/CF/CFD1-D/CFD181Q.Seq.d/                        793   0.0
SFA749 (SFA749Q) /CSM/SF/SFA7-C/SFA749Q.Seq.d/                        502   e-141
VHK186 (VHK186Q) /CSM/VH/VHK1-D/VHK186Q.Seq.d/                         50   4e-05
CHG701 (CHG701Q) /CSM/CH/CHG7-A/CHG701Q.Seq.d/                         48   2e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48   2e-08  19
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   9e-07  12
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   2e-06  12
AC126780|AC126780.12 Medicago truncatula clone mth2-10n4, WORKING DRAFT SEQUENCE, 2 ordered pieces.    36   8e-05  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-04  16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   3e-04  12
AL389901|AL389901.1 Neurospora crassa DNA linkage group II BAC clone B7F21.    44   5e-04  2
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40   5e-04  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   5e-04  11
AC015109|AC015109.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    42   0.001  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007154_641(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.64
AP000413_9(AP000413|pid:none) Arabidopsis thaliana genomic DNA, ...    35   1.4
AM270040_65(AM270040|pid:none) Aspergillus niger contig An02c046...    35   2.4
CP000851_2843(CP000851|pid:none) Shewanella pealeana ATCC 700345...    34   4.2
CP001172_2083(CP001172|pid:none) Acinetobacter baumannii AB307-0...    33   5.4
CP000521_1478(CP000521|pid:none) Acinetobacter baumannii ATCC 17...    33   5.4
(Q9JIL8) RecName: Full=DNA repair protein RAD50;          EC=3.6...    33   7.1
AL645741_5(AL645741|pid:none) Mouse DNA sequence from clone RP23...    33   7.1
BC058180_1(BC058180|pid:none) Mus musculus RAD50 homolog (S. cer...    33   7.1
CP000789_2563(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    33   9.3

 psg: 0.48  gvh: 0.22  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFC245 is cyt

>SFC245Z.Seq
----------TTAGATCATACATATCAAGGATCGTGATAGAATTTATCAATTAAATAATA
AAGATACTCAACAGCAACAGCANCANCAGCAACAACAAGATAATGATGAAGATATTAAAG
TTTCAACTTCATCAAGTAAAAAATATCANCAACAAGAAAAAGAAGAAAAAGAAAAAGAAG
ATAAAGATAATGGTTTTATGAAATTACATGCAGATGCTTGGGAAATTTATTTATGGTTAA
AATCAATGCCAGGATTTCCAAGAGATCAATTTATTTTACAAAGAAAAAATCAATTATTTA
AATTGGCAATTTATATTGGTTCATTAGCAAATCCTTTAATTTCTGCAAAGGATAAAGAAG
TTGTTTCAATTTCAATGGAAGCATTCGACGAAGCATTACATATTGCTGATATCACTCAAA
ATAAAGAATACTTTTGTGCTGCCACTGCTCATAAATCATCTGTTGTTTATCGTACTCTTC
CAGAGGATGAACGTGCCAAACTTTTCAAATCACTTGTTGATGTTGAACAATCTATGAAAC
CTGTAAATAGTGAAATTAGAGATTTAATTCAATCAATAGAAAATAAAGATCCATCACTTT
TCCCTNAGAAAAAAGAACAAGAAGATAAAGAAAAAGANAAAAATNAAAAAAGAAAA