>SFC238 (SFC238Q) /CSM/SF/SFC2-B/SFC238Q.Seq.d/
GTTTATTCAATAAATTTAAATTTGATATGATAATTAGTTAATCGTAATATTATAATATTT
ACATATAAAAGAAAAAAAGAAAAAAATTAATTAAAATAATTGAAAAATAAAAAAAATGTC
ATTTAACATACCCACAATTCATACAAATAACTCCAAAAACGATAATAATGATGAAAATAA
TAATAATAATCAACACACAGAAAATCCATACATTTCAATAAATAATAAAATCACCCCAGA
AAATAGTATCTCATCAAATCTTAATCAAATCGAGAAAGCTGTTAAAGTTGCCAATTCTCA
AAACCTTGATTTAGCATTGATTGGTAATTGCTCATTTGGTGCTCTTATTGATAAGAAATC
ATGCATCAAATGGTGTTGCATTCCAAGATTTGATGCAGATCCAATATTTTGCTCATTAGT
TAGAAAATCAAATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGA
GCAGGTATATATAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGG
TGGTGTTGAAGTAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACC
ATCAATGATTATTAGAGTCATTAAGCCATTXXXXXXXXXXTGGTACAAGAGATTATAAAA
CAATTCAAAATGATGTTTATGGTCAATTAATTTTAGCATCTATTCAAATGTTTTTTGATC
AAAGATTAAATAAACCAGGTGATATTCATTTATTCCATAAATTAGAAGGTTTAGGTATGC
AAGCATATACAAATTATAATAAACCAGATTGTGGTCCATTAGGTAAAGGTTCAATTGAAG
ATGGTAAAATTTATACATTTTCATCATTTATGTGTTGGACAGGTTGTGATAGATTAGCAA
AGATTGCAAAGAGTTTAAAGATTCCATTACGTGCACATTTCTGGCAAGAATCTGCAAATA
AAATCAAGGAAGAAATGATGGAACGTTGCTTCAACAAGGAAAAGAATTCATTTGTATCAA
CTTGGGATGGAGATGATGTTGATCCTTACCTTTTATTGATTGCAGAATCTGGATTCACTA
AAATTGATGATCCAAAATTCATTGGAACCGTTGAATATTTAGAGAAAAAACTTAGAAGAG
GCAAATACATTATTCAATCACCAGACAGTGTTAGTGCATCAACTACATTCACTCTCTACT
ATATTTCTTGTATTGCTAAAATGGGTAGAAAAGAAGAAGCAAGAGAACTTTTTGAAAATA
TCCTTAAGATTGCACTCCATTGGGTTTAATTAGTCAAGATGTTAACCTTAAACCAAAGAA
ATTGGGGAACTTTCCAAAAACAACT

fiq*i*i*ydn*livil*ylhikekkkkin*nn*KIKKMSFNIPTIHTNNSKNDNNDENN
NNNQHTENPYISINNKITPENSISSNLNQIEKAVKVANSQNLDLALIGNCSFGALIDKKS
CIKWCCIPRFDADPIFCSLVRKSNDSGFYDVVVENFAFSEQVYIKNTAVLSTKLYNTNGG
GVEVIDFAPRFNMFSRPYRPSMIIRVIKP---

---GTRDYKTIQNDVYGQLILASIQMFFDQRLNKPGDIHLFHKLEGLGMQAYTNYNKPDC
GPLGKGSIEDGKIYTFSSFMCWTGCDRLAKIAKSLKIPLRAHFWQESANKIKEEMMERCF
NKEKNSFVSTWDGDDVDPYLLLIAESGFTKIDDPKFIGTVEYLEKKLRRGKYIIQSPDSV
SASTTFTLYYISCIAKMGRKEEARELFENILKIALHWV*lvkmltlnqrnwgtfqkq

Frame A:
vysinlnli**lvnrniiiftykrkkekn*lk*lknkknvi*hthnsyk*lqkr****k*
***sthrksihfnk**nhprk*yliks*snresc*scqfskp*fsidw*lliwcsy**ei
mhqmvlhski*crsnillis*kik*frfl*ccg*klciq*agiykkhsgfinktvqh*wr
wc*sn*fctkiqyvlssiqtindy*sh*ai---

---wykrl*nnsk*clwsinfsiysnvf*skik*tr*ysfip*irrfryasiykl**trl
wsir*rfn*rw*nlyifiiyvldrl**iskdckefkdsitctflarick*nqgrndgtll
qqgkeficinlgwr*c*slpfidcriwih*n**skihwnr*ifrekt*krqihysitrqc
*cinyihsllyflyc*ng*krrskrtf*kyp*dctplglisqdvnlkpkklgnfpktt

Frame B:
fiq*i*i*ydn*livil*ylhikekkkkin*nn*KIKKMSFNIPTIHTNNSKNDNNDENN
NNNQHTENPYISINNKITPENSISSNLNQIEKAVKVANSQNLDLALIGNCSFGALIDKKS
CIKWCCIPRFDADPIFCSLVRKSNDSGFYDVVVENFAFSEQVYIKNTAVLSTKLYNTNGG
GVEVIDFAPRFNMFSRPYRPSMIIRVIKP---

---GTRDYKTIQNDVYGQLILASIQMFFDQRLNKPGDIHLFHKLEGLGMQAYTNYNKPDC
GPLGKGSIEDGKIYTFSSFMCWTGCDRLAKIAKSLKIPLRAHFWQESANKIKEEMMERCF
NKEKNSFVSTWDGDDVDPYLLLIAESGFTKIDDPKFIGTVEYLEKKLRRGKYIIQSPDSV
SASTTFTLYYISCIAKMGRKEEARELFENILKIALHWV*lvkmltlnqrnwgtfqkq

Frame C:
lfnkfkfdmiis*s*yyniyi*kkkrkklikiiek*kkchltypqfiqitpktiimmkii
iiintqkihtfq*iikspqkivshqiliksrkllklpilktli*h*lviahlvlllirnh
asngvafqdlmqiqyfah*lenqmiqvfmmlwlktlhsvsryi*ktqrfyqqncttlmev
vlk*lilhqdsicslvhtdhq*lleslsh---

---vqeiikqfkmmfmvn*f*hlfkcflikd*inqvifiysin*kv*vckhiqiiinqiv
vh*vkvqlkmvkfihfhhlcvgqvvid*qrlqrv*rfhyvhisgknlqiksrkk*wnvas
trkrihlyqlgmemmliltfy*lqnldslklmiqnsleplni*rknleeantlfnhqtvl
vhqlhslstiflvllkwvekkkqenflkislrlhsigfn*src*p*tkeigelsknn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC238 (SFC238Q) /CSM/SF/SFC2-B/SFC238Q.Seq.d/                       2377   0.0
AFD766 (AFD766Q) /CSM/AF/AFD7-C/AFD766Q.Seq.d/                       1356   0.0
AFJ217 (AFJ217Q) /CSM/AF/AFJ2-A/AFJ217Q.Seq.d/                       1350   0.0
AFG659 (AFG659Q) /CSM/AF/AFG6-C/AFG659Q.Seq.d/                       1348   0.0
CFJ567 (CFJ567Q) /CSM/CF/CFJ5-C/CFJ567Q.Seq.d/                       1344   0.0
CFI825 (CFI825Q) /CSM/CF/CFI8-B/CFI825Q.Seq.d/                       1344   0.0
CFF343 (CFF343Q) /CSM/CF/CFF3-B/CFF343Q.Seq.d/                       1344   0.0
AHM143 (AHM143Q) /CSM/AH/AHM1-B/AHM143Q.Seq.d/                       1344   0.0
AFF466 (AFF466Q) /CSM/AF/AFF4-C/AFF466Q.Seq.d/                       1344   0.0
CHB367 (CHB367Q) /CSM/CH/CHB3-C/CHB367Q.Seq.d/                       1342   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1029   0.0    5
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    56   2e-11  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           56   7e-10  6
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    50   9e-10  14
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    48   2e-09  10
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    52   6e-09  15
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           52   7e-09  8
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    52   8e-09  16
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50   2e-08  18
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   3e-08  20

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_62(AC116979|pid:none) Dictyostelium discoideum chromoso...   432   e-119
AY923753_1(AY923753|pid:none) Physarum polycephalum glycosyl hyd...   166   2e-39
DQ384332_1(DQ384332|pid:none) Physarum polycephalum glycosyl hyd...   165   4e-39
AE013598_1578(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   161   4e-38
AM039952_3335(AM039952|pid:none) Xanthomonas campestris pv. vesi...   160   7e-38
CP000544_1102(CP000544|pid:none) Halorhodospira halophila SL1, c...   160   1e-37
AE008923_3162(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   159   2e-37
AM920689_1132(AM920689|pid:none) Xanthomonas campestris pv. camp...   157   6e-37
CP000285_234(CP000285|pid:none) Chromohalobacter salexigens DSM ...   155   3e-36
CP000453_6(CP000453|pid:none) Alkalilimnicola ehrlichei MLHE-1, ...   154   7e-36

 psg: 0.86  gvh: 0.27  alm: 0.44  top: 0.17  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFC238 is cyt

>SFC238F.Seq
GTTTATTCAATAAATTTAAATTTGATATGATAATTAGTTAATCGTAATATTATAATATTT
ACATATAAAAGAAAAAAAGAAAAAAATTAATTAAAATAATTGAAAAATAAAAAAAATGTC
ATTTAACATACCCACAATTCATACAAATAACTCCAAAAACGATAATAATGATGAAAATAA
TAATAATAATCAACACACAGAAAATCCATACATTTCAATAAATAATAAAATCACCCCAGA
AAATAGTATCTCATCAAATCTTAATCAAATCGAGAAAGCTGTTAAAGTTGCCAATTCTCA
AAACCTTGATTTAGCATTGATTGGTAATTGCTCATTTGGTGCTCTTATTGATAAGAAATC
ATGCATCAAATGGTGTTGCATTCCAAGATTTGATGCAGATCCAATATTTTGCTCATTAGT
TAGAAAATCAAATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGA
GCAGGTATATATAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGG
TGGTGTTGAAGTAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACC
ATCAATGATTATTAGAGTCATTAAGCCATT----------

>SFC238Z.Seq
----------TGGTACAAGAGATTATAAAACAATTCAAAATGATGTTTATGGTCAATTAA
TTTTAGCATCTATTCAAATGTTTTTTGATCAAAGATTAAATAAACCAGGTGATATTCATT
TATTCCATAAATTAGAAGGTTTAGGTATGCAAGCATATACAAATTATAATAAACCAGATT
GTGGTCCATTAGGTAAAGGTTCAATTGAAGATGGTAAAATTTATACATTTTCATCATTTA
TGTGTTGGACAGGTTGTGATAGATTAGCAAAGATTGCAAAGAGTTTAAAGATTCCATTAC
GTGCACATTTCTGGCAAGAATCTGCAAATAAAATCAAGGAAGAAATGATGGAACGTTGCT
TCAACAAGGAAAAGAATTCATTTGTATCAACTTGGGATGGAGATGATGTTGATCCTTACC
TTTTATTGATTGCAGAATCTGGATTCACTAAAATTGATGATCCAAAATTCATTGGAACCG
TTGAATATTTAGAGAAAAAACTTAGAAGAGGCAAATACATTATTCAATCACCAGACAGTG
TTAGTGCATCAACTACATTCACTCTCTACTATATTTCTTGTATTGCTAAAATGGGTAGAA
AAGAAGAAGCAAGAGAACTTTTTGAAAATATCCTTAAGATTGCACTCCATTGGGTTTAAT
TAGTCAAGATGTTAACCTTAAACCAAAGAAATTGGGGAACTTTCCAAAAACAACT

>SFC238P.Seq
GTTTATTCAATAAATTTAAATTTGATATGATAATTAGTTAATCGTAATATTATAATATTT
ACATATAAAAGAAAAAAAGAAAAAAATTAATTAAAATAATTGAAAAATAAAAAAAATGTC
ATTTAACATACCCACAATTCATACAAATAACTCCAAAAACGATAATAATGATGAAAATAA
TAATAATAATCAACACACAGAAAATCCATACATTTCAATAAATAATAAAATCACCCCAGA
AAATAGTATCTCATCAAATCTTAATCAAATCGAGAAAGCTGTTAAAGTTGCCAATTCTCA
AAACCTTGATTTAGCATTGATTGGTAATTGCTCATTTGGTGCTCTTATTGATAAGAAATC
ATGCATCAAATGGTGTTGCATTCCAAGATTTGATGCAGATCCAATATTTTGCTCATTAGT
TAGAAAATCAAATGATTCAGGTTTTTATGATGTTGTGGTTGAAAACTTTGCATTCAGTGA
GCAGGTATATATAAAAAACACAGCGGTTTTATCAACAAAACTGTACAACACTAATGGAGG
TGGTGTTGAAGTAATTGATTTTGCACCAAGATTCAATATGTTCTCTCGTCCATACAGACC
ATCAATGATTATTAGAGTCATTAAGCCATT----------TGGTACAAGAGATTATAAAA
CAATTCAAAATGATGTTTATGGTCAATTAATTTTAGCATCTATTCAAATGTTTTTTGATC
AAAGATTAAATAAACCAGGTGATATTCATTTATTCCATAAATTAGAAGGTTTAGGTATGC
AAGCATATACAAATTATAATAAACCAGATTGTGGTCCATTAGGTAAAGGTTCAATTGAAG
ATGGTAAAATTTATACATTTTCATCATTTATGTGTTGGACAGGTTGTGATAGATTAGCAA
AGATTGCAAAGAGTTTAAAGATTCCATTACGTGCACATTTCTGGCAAGAATCTGCAAATA
AAATCAAGGAAGAAATGATGGAACGTTGCTTCAACAAGGAAAAGAATTCATTTGTATCAA
CTTGGGATGGAGATGATGTTGATCCTTACCTTTTATTGATTGCAGAATCTGGATTCACTA
AAATTGATGATCCAAAATTCATTGGAACCGTTGAATATTTAGAGAAAAAACTTAGAAGAG
GCAAATACATTATTCAATCACCAGACAGTGTTAGTGCATCAACTACATTCACTCTCTACT
ATATTTCTTGTATTGCTAAAATGGGTAGAAAAGAAGAAGCAAGAGAACTTTTTGAAAATA
TCCTTAAGATTGCACTCCATTGGGTTTAATTAGTCAAGATGTTAACCTTAAACCAAAGAA
ATTGGGGAACTTTCCAAAAACAACT