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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC237
Library SF
(Link to library)
Clone ID SFC237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16426-1
Original site URL
Representative seq. ID SFC237P
(Link to Original site)
Representative DNA sequence 
>SFC237 (SFC237Q) /CSM/SF/SFC2-B/SFC237Q.Seq.d/
CACTGTTGGCCTACTGGTATCAAATTACTTTAAGNAGTCATCTCTCAAATCCATCAGTAT
CTTTTGGATGTATCATTACAATATCCTGCACCTCATATCTATGCATTGGTTTCCGAAAGA
GAGAACTTTGTAAAGAAATATGAAAGTGCCATAGAGAGCTATAGAAGAACCAAAGAGAAA
CCAACTACAAAAATAGGATTTTTAGGTTGTTTTGGAGAAGAGAAAGATAGTATCGACTAC
TTTCAAGAGAAGATCGATGAATTAACCAAAAAGATTGAATACGAGAGAGCCGAGGCTGAA
ACTGGTTACTATATTAAAAATGCCAATTCAAATGNTGGTGGTTCAAGTNTXXXXXXXXXX
ATCATTCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCATTTGGTGCAATTTT
ACGTATCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTAGCAAAAACAAGGAG
ACAAATCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAA
TCTTTTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATT
TGGTGCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAA
TACTCCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCAT
TGGTTTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTA
TGGTATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATA
TAAATTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGA
TGGTACCAATAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAG
TACAAGTTTAAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAATCTCTGA
ATATAATTCAAATAGTTATAAACCACCATATTANAATTAATAAAATCAATAATTTNATTT
AGATTTCCCAATGGGGTTCTGCAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptgikll*XVISQIHQYLLDVSLQYPAPHIYALVSERENFVKKYESAIESYRRTKEK
PTTKIGFLGCFGEEKDSIDYFQEKIDELTKKIEYERAEAETGYYIKNANSNXGGSS---

---SFQMINYILIAAAGSFGAILRIVGLIIQLIKLKWLAKTRRQIDDTLHQGPFAYGVNY
AKNLLILQLTLAYSTLSPFILIFGAWYFGLSYLVQKYNIIWVNTPNYQCGGFMSPMHFRR
TIIGLLIYHILMIGTFNVYKFYYGILVVICLVVTIVFWYFAEYKFKDISKSGIMDQYQKQ
QTDGTNSGDIEMKASGSSVINDSTSLNPTVHQEFHDASHSISEYNSNSYKPPYXN**nq*
fxldfpmgfck
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgikll*XVISQIHQYLLDVSLQYPAPHIYALVSERENFVKKYESAIESYRRTKEK
PTTKIGFLGCFGEEKDSIDYFQEKIDELTKKIEYERAEAETGYYIKNANSNXGGSS---

---iipndqlyfnccswfiwcnftyrwfnysth*iemvsknketnr*ypssrsiclwckl
ckesfnpsidfgllnsitfyfniwclvfrfklsrskv*hhlgkys*lsmwwfhepnafqt
ydhwfthlsypydwyfqclqillwyfgshlfscyyrilvfc*i*iqgyfkewyngsiskt
tn*wyq*w*y*neslw*fsyq**ykfksnctsrip*cfsfnl*i*fk*l*ttilxliksi
ixfrfpngvlq

Frame B:
tvgllvsnyfkxsslksisifwmyhynilhlismhwfpkertl*rnmkvp*raieepkrn
qlqk*df*vvlekrkivsttfkrrsmn*pkrlntreprlklvtilkmpiqmxvvqv---

---SFQMINYILIAAAGSFGAILRIVGLIIQLIKLKWLAKTRRQIDDTLHQGPFAYGVNY
AKNLLILQLTLAYSTLSPFILIFGAWYFGLSYLVQKYNIIWVNTPNYQCGGFMSPMHFRR
TIIGLLIYHILMIGTFNVYKFYYGILVVICLVVTIVFWYFAEYKFKDISKSGIMDQYQKQ
QTDGTNSGDIEMKASGSSVINDSTSLNPTVHQEFHDASHSISEYNSNSYKPPYXN**nq*
fxldfpmgfck

Frame C:
llaywyqitlxshlsnpsvsfgciitisctsylcigfrkrelckei*kchrel*knqret
nyknrifrlfwrrer*yrllsredr*inqkd*iresrg*nwlly*kcqfkxwwfkx---

---hsk*siif*llqlvhlvqfyvslv*lfnsln*ng*qkqgdksmipfikvhllmv*tm
qrif*sfn*lwltqlyhllf*ylvlgisv*visfksitsfg*illiinvvvs*aqcisdv
rslvysfiisl*lvlsmftnstmvfw*ssv*lllsyfgillninsrifqrvv*winiknn
klmvpivvilk*kplvvqlsmivqv*iqlyiknsmmlliqslniiqivinhhixinkinn
xi*isqwgsa
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC237 (SFC237Q) /CSM/SF/SFC2-B/SFC237Q.Seq.d/                       2101   0.0
CFC669 (CFC669Q) /CSM/CF/CFC6-C/CFC669Q.Seq.d/                       1457   0.0
AHD317 (AHD317Q) /CSM/AH/AHD3-A/AHD317Q.Seq.d/                       1451   0.0
AHA204 (AHA204Q) /CSM/AH/AHA2-A/AHA204Q.Seq.d/                       1433   0.0
CHF487 (CHF487Q) /CSM/CH/CHF4-D/CHF487Q.Seq.d/                       1425   0.0
AHA260 (AHA260Q) /CSM/AH/AHA2-C/AHA260Q.Seq.d/                       1419   0.0
AFG823 (AFG823Q) /CSM/AF/AFG8-A/AFG823Q.Seq.d/                       1407   0.0
CHQ713 (CHQ713Q) /CSM/CH/CHQ7-A/CHQ713Q.Seq.d/                       1400   0.0
VHI850 (VHI850Q) /CSM/VH/VHI8-C/VHI850Q.Seq.d/                       1396   0.0
CHM182 (CHM182Q) /CSM/CH/CHM1-D/CHM182Q.Seq.d/                       1394   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1366   0.0    3
AF019983|AF019983.1 Dictyostelium discoideum R1062 gene, partial cds.  1247   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   5e-05  16
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   6e-04  6
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    36   0.011  10
AC099719|AC099719.2 Mus musculus clone RP23-394F19, WORKING DRAFT SEQUENCE, 8 unordered pieces.    50   0.066  1
BD099880|BD099880.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    38   0.069  2
BD019942|BD019942.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    38   0.069  2
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42   0.095  13
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   0.19   14
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_57(AC116963|pid:none) Dictyostelium discoideum chromoso...   447   e-124
AF019983_1(AF019983|pid:none) Dictyostelium discoideum R1062 gen...   402   e-111
AF448811_1(AF448811|pid:none) Davidia involucrata unknown gene.        98   4e-19
AC025295_7(AC025295|pid:none) Arabidopsis thaliana chromosome 1 ...    89   3e-16
AB039928_1(AB039928|pid:none) Arabidopsis thaliana mRNA for ERD4...    89   3e-16
AK221977_1(AK221977|pid:none) Arabidopsis thaliana mRNA for ERD4...    87   8e-16
EU186363_1(EU186363|pid:none) Brassica rapa clone S27 early-resp...    84   8e-15
CR380953_357(CR380953|pid:none) Candida glabrata strain CBS138 c...    72   3e-11
AE016820_257(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    70   1e-10
CR382124_759(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    69   2e-10
protein update 2009. 5.22
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.15  top: 0.67  tms: 0.27  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SFC237 is pla
5' end seq. ID SFC237F
5' end seq. 
>SFC237F.Seq
CACTGTTGGCCTACTGGTATCAAATTACTTTAAGNAGTCATCTCTCAAATCCATCAGTAT
CTTTTGGATGTATCATTACAATATCCTGCACCTCATATCTATGCATTGGTTTCCGAAAGA
GAGAACTTTGTAAAGAAATATGAAAGTGCCATAGAGAGCTATAGAAGAACCAAAGAGAAA
CCAACTACAAAAATAGGATTTTTAGGTTGTTTTGGAGAAGAGAAAGATAGTATCGACTAC
TTTCAAGAGAAGATCGATGAATTAACCAAAAAGATTGAATACGAGAGAGCCGAGGCTGAA
ACTGGTTACTATATTAAAAATGCCAATTCAAATGNTGGTGGTTCAAGTNT----------
Length of 5' end seq. 350
3' end seq. ID SFC237Z
3' end seq. 
>SFC237Z.Seq
----------ATCATTCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCATTTG
GTGCAATTTTACGTATCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTAGCAA
AAACAAGGAGACAAATCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTAAACT
ATGCAAAGAATCTTTTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTA
TTTTAATATTTGGTGCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCA
TTTGGGTAAATACTCCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGAC
GTACGATCATTGGTTTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACA
AATTCTACTATGGTATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATT
TTGCTGAATATAAATTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAAC
AACAAACTGATGGTACCAATAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTA
TCAATGATAGTACAAGTTTAAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATT
CAATCTCTGAATATAATTCAAATAGTTATAAACCACCATATTANAATTAATAAAATCAAT
AATTTNATTTAGATTTCCCAATGGGGTTCTGCAAA
Length of 3' end seq. 745
Connected seq. ID SFC237P
Connected seq. 
>SFC237P.Seq
CACTGTTGGCCTACTGGTATCAAATTACTTTAAGNAGTCATCTCTCAAATCCATCAGTAT
CTTTTGGATGTATCATTACAATATCCTGCACCTCATATCTATGCATTGGTTTCCGAAAGA
GAGAACTTTGTAAAGAAATATGAAAGTGCCATAGAGAGCTATAGAAGAACCAAAGAGAAA
CCAACTACAAAAATAGGATTTTTAGGTTGTTTTGGAGAAGAGAAAGATAGTATCGACTAC
TTTCAAGAGAAGATCGATGAATTAACCAAAAAGATTGAATACGAGAGAGCCGAGGCTGAA
ACTGGTTACTATATTAAAAATGCCAATTCAAATGNTGGTGGTTCAAGTNT----------
ATCATTCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCATTTGGTGCAATTTT
ACGTATCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTAGCAAAAACAAGGAG
ACAAATCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAA
TCTTTTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATT
TGGTGCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAA
TACTCCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCAT
TGGTTTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTA
TGGTATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATA
TAAATTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAACTGA
TGGTACCAATAGTGGTGATATTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAG
TACAAGTTTAAATCCAACTGTACATCAAGAATTCCATGATGCTTCTCATTCAATCTCTGA
ATATAATTCAAATAGTTATAAACCACCATATTANAATTAATAAAATCAATAATTTNATTT
AGATTTCCCAATGGGGTTCTGCAAA
Length of connected seq. 1095
Full length Seq ID -
Full length Seq. -
Length of full length seq. -