SFC233 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFC233
Library	SF (Link to library)
Clone ID	SFC233 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11964-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFC2-B/SFC233Q.Seq.d/
Representative seq. ID	SFC233P (Link to Original site)
Representative DNA sequence	>SFC233 (SFC233Q) /CSM/SF/SFC2-B/SFC233Q.Seq.d/ CACTGTTGGCCTACTGGAAATTTTTATTTTTAGTAACAATACAAATATAAGATTTCTTAT ATTGGATACGTGGTGTACTTTTGTGTTTGGGTGGATTTTATTATTTATTTATTTTAATCA TCATTTTTATTTGTAATATATTTCACTTTTATCACACAAAACACACACAAAACACACACT CACAAAAACACACACTCACACATAAATAAATACACAATAATAAAAGAAGAAAGAAAATGG AGAAAAGAAAGAGTATATTTTTTGCAAATGATAGTGAAGATAATACATCATCAGGAGATT TAAGTAGTTTTACAAAACGTGGTACAATTACACCAGGTAAGATTGCAAATGCACGTGAAG GAGAGTTATCACAAATGATTGATGTTGAATCGGAACAGAAATATCAAGAAATTATTGAAC TTTTAGTTACAGGTGGTTATTTTAGAGCACGTATTTCAGGTTTATCACCATTTGATAAAG TTGTTGGTGGCATGGCTTGGTCAATCACTGCTTCAAATGTTGATGTTGACGCTGATTTAT TCTTTCAAGAAAATTCAAATATTAAACAAAAAGTAXXXXXXXXXXTAGAGAGACAGAGAA ATTGGATGCATTGGAAACACCAGAGAATACTAAAGCATTACAAGCACTACGTTCATTGGT ACTATTGAATGAAACATTGATTGCTCAAGAGGAACTTTTCAAACAATCTTGTAAACGTCA AATGGTAGAATATAAACAAAAGATCGAACAACTCTTATCACAAGATGCCTCTACTCAAGA GGATCTTCAAGACAGTGATAGACAACAACAAATTCAACAAGCATTCGATAGTGATATTGG TAAATTAAAGAAATTGAAATTATTACTCAATAAAAAGAATAGAGATATCTCTTTGATTCA ACGTTATCTCGATGAATTACCATCTCGTGCCGAACTATTACAATATCAAAGACAATTTGT TGAATTATCCGAACAAAGTAGTTCGAAATTAACCGAAACCAGACAATACTATACAACCTA CAATACCTTTGAAGATAAGAAAACACTTTTAGAAAATGAACTCTCAATTCTCAATTCAAT TCAATCCAAATATAGCATAGCTATGTCTTCAACAAATAATAAAGAATTATTCATTAAATC AATGGATCAAATCATTGATGGTATTCAACAAGTTTTAGATAAATCTGAAAATAAATGGAA TGTTGAAAAAGTTCGTCATGATACTTTATCTGGTCAATATATGACTTTATTAGATCAAGA GAGAAATTATTATAAATTAACAAAAGACTTGAAGAAGAATGTAGAAAGAATAATTATTAA TTAAAAAATTAAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	llaywkflflvtiqidflywirgvllclggfyylfiliiificnifhfyhtkhtqnths qkhtlthkIHNNKRRKKMEKRKSIFFANDSEDNTSSGDLSSFTKRGTITPGKIANAREG ELSQMIDVESEQKYQEIIELLVTGGYFRARISGLSPFDKVVGGMAWSITASNVDVDADLF FQENSNIKQKV--- ---RETEKLDALETPENTKALQALRSLVLLNETLIAQEELFKQSCKRQMVEYKQKIEQLL SQDASTQEDLQDSDRQQQIQQAFDSDIGKLKKLKLLLNKKNRDISLIQRYLDELPSRAEL LQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLENELSILNSIQSKYSIAMSSTN NKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSGQYMTLLDQERNYYKLTKDLKK NVERIIIN*kik
Translated Amino Acid sequence (All Frames)	Frame A: hcwptgnfyf*qykykisyigyvvyfcvwvdfiiylfssflfviyftfitqnthktht hknthshinkytiikeerkwrkervyflqmivkiihhqeivvlqnvvqlhqvrlqmhvk esyhklmlnrnrnikkllnflqvvilehvfqvyhhlikllvawlgqsllqmlmltliy sfkkiqilnkk--- ---rdreigcigntreysitsttfigtienidcsrgtfqtiltsngritkdrttl itrclysrgssrqtttnstsirywikeieiitqkerylfdstlsritiscrt itiskticiirtkfeinrnqtilynlqylrentfrktlnsqfnsiqihsyvfnk *riihingsnhwystsfrikmecksssyfiwsiydfirsrekllinkrlee ecrknnylkn* Frame B: tvglleififsnntnirflildtwctfvfgwillfiyfnhhfylyisllshkthtkhtl tkththtintqkkkengekkeyifckryiirrfkfyktwynytrdckctr rvitndcigteisrnytfsyrwlfstyfrfitiscwwhglvnhcfkccrfi lsrkfkytks--- ---RETEKLDALETPENTKALQALRSLVLLNETLIAQEELFKQSCKRQMVEYKQKIEQLL SQDASTQEDLQDSDRQQQIQQAFDSDIGKLKKLKLLLNKKNRDISLIQRYLDELPSRAEL LQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLENELSILNSIQSKYSIAMSSTN NKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSGQYMTLLDQERNYYKLTKDLKK NVERIIINkik Frame C: llaywkflflvtiqidflywirgvllclggfyylfiliiificnifhfyhtkhtqnths qkhtlthkIHNNKRRKKMEKRKSIFFANDSEDNTSSGDLSSFTKRGTITPGKIANAREG ELSQMIDVESEQKYQEIIELLVTGGYFRARISGLSPFDKVVGGMAWSITASNVDVDADLF FQENSNIKQKV--- ---erqrnwmhwkhqrilkhykhyvhwyymkhllkrnfsnnlvnvkwninkrsnnsy hkmpllkrifktvidnnkfnkhsivilvnrnnyysikrieislfnvismnyhlvpny ynikdnllnypnkvvrnpkpdntiqptiplkirkhfkmnsqfsiqfnpnialclqqi iknyslnqwikslmvfnkfinlkingmlkkfvmilylvnilyikreiiinqktrr mkellikkl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFC233 (SFC233Q) /CSM/SF/SFC2-B/SFC233Q.Seq.d/ 2083 0.0 VHB221 (VHB221Q) /CSM/VH/VHB2-A/VHB221Q.Seq.d/ 1467 0.0 VHA391 (VHA391Q) /CSM/VH/VHA3-D/VHA391Q.Seq.d/ 1455 0.0 VHO250 (VHO250Q) /CSM/VH/VHO2-C/VHO250Q.Seq.d/ 1352 0.0 VFH882 (VFH882Q) /CSM/VF/VFH8-D/VFH882Q.Seq.d/ 1294 0.0 VHB531 (VHB531Q) /CSM/VH/VHB5-B/VHB531Q.Seq.d/ 1201 0.0 VHJ120 (VHJ120Q) /CSM/VH/VHJ1-A/VHJ120Q.Seq.d/ 902 0.0 VHH305 (VHH305Q) /CSM/VH/VHH3-A/VHH305Q.Seq.d/ 706 0.0 VSH550 (VSH550Q) /CSM/VS/VSH5-C/VSH550Q.Seq.d/ 666 0.0 VHN779 (VHN779Q) /CSM/VH/VHN7-D/VHN779Q.Seq.d/ 654 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 4e-09 22 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 3e-07 19 AC115584\|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 38 4e-07 10 AP004170\|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 40 6e-07 17 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 8e-07 17 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 36 3e-06 25 AC114263\|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 40 3e-06 15 AB063521\|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 38 8e-06 20 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 9e-06 18 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 32 2e-05 20
dna update	2003.12.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54CV3) RecName: Full=Coiled-coil domain-containing protein 93 ... 379 e-103 BC115269_1(BC115269\|pid:none) Danio rerio coiled-coil domain con... 162 2e-38 (Q640U7) RecName: Full=Coiled-coil domain-containing protein 93;... 158 5e-37 BC134535_1(BC134535\|pid:none) Bos taurus hypothetical LOC616839,... 158 5e-37 AM393188_1(AM393188\|pid:none) Synthetic construct Homo sapiens c... 158 5e-37 AK159415_1(AK159415\|pid:none) Mus musculus osteoclast-like cell ... 158 5e-37 AK085701_1(AK085701\|pid:none) Mus musculus 10 days lactation, ad... 158 5e-37 BC024674_1(BC024674\|pid:none) Mus musculus coiled-coil domain co... 158 5e-37 AB384355_1(AB384355\|pid:none) Synthetic construct DNA, clone: pF... 158 5e-37 (Q5BJT7) RecName: Full=Coiled-coil domain-containing protein 93;... 157 1e-36
protein update	2009. 5.22
PSORT	psg: 0.58 gvh: 0.30 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.03 nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for SFC233 is nuc
5' end seq. ID	SFC233F
5' end seq.	>SFC233F.Seq CACTGTTGGCCTACTGGAAATTTTTATTTTTAGTAACAATACAAATATAAGATTTCTTAT ATTGGATACGTGGTGTACTTTTGTGTTTGGGTGGATTTTATTATTTATTTATTTTAATCA TCATTTTTATTTGTAATATATTTCACTTTTATCACACAAAACACACACAAAACACACACT CACAAAAACACACACTCACACATAAATAAATACACAATAATAAAAGAAGAAAGAAAATGG AGAAAAGAAAGAGTATATTTTTTGCAAATGATAGTGAAGATAATACATCATCAGGAGATT TAAGTAGTTTTACAAAACGTGGTACAATTACACCAGGTAAGATTGCAAATGCACGTGAAG GAGAGTTATCACAAATGATTGATGTTGAATCGGAACAGAAATATCAAGAAATTATTGAAC TTTTAGTTACAGGTGGTTATTTTAGAGCACGTATTTCAGGTTTATCACCATTTGATAAAG TTGTTGGTGGCATGGCTTGGTCAATCACTGCTTCAAATGTTGATGTTGACGCTGATTTAT TCTTTCAAGAAAATTCAAATATTAAACAAAAAGTA----------
Length of 5' end seq.	575
3' end seq. ID	SFC233Z
3' end seq.	>SFC233Z.Seq ----------TAGAGAGACAGAGAAATTGGATGCATTGGAAACACCAGAGAATACTAAAG CATTACAAGCACTACGTTCATTGGTACTATTGAATGAAACATTGATTGCTCAAGAGGAAC TTTTCAAACAATCTTGTAAACGTCAAATGGTAGAATATAAACAAAAGATCGAACAACTCT TATCACAAGATGCCTCTACTCAAGAGGATCTTCAAGACAGTGATAGACAACAACAAATTC AACAAGCATTCGATAGTGATATTGGTAAATTAAAGAAATTGAAATTATTACTCAATAAAA AGAATAGAGATATCTCTTTGATTCAACGTTATCTCGATGAATTACCATCTCGTGCCGAAC TATTACAATATCAAAGACAATTTGTTGAATTATCCGAACAAAGTAGTTCGAAATTAACCG AAACCAGACAATACTATACAACCTACAATACCTTTGAAGATAAGAAAACACTTTTAGAAA ATGAACTCTCAATTCTCAATTCAATTCAATCCAAATATAGCATAGCTATGTCTTCAACAA ATAATAAAGAATTATTCATTAAATCAATGGATCAAATCATTGATGGTATTCAACAAGTTT TAGATAAATCTGAAAATAAATGGAATGTTGAAAAAGTTCGTCATGATACTTTATCTGGTC AATATATGACTTTATTAGATCAAGAGAGAAATTATTATAAATTAACAAAAGACTTGAAGA AGAATGTAGAAAGAATAATTATTAATTAAAAAATTAAA
Length of 3' end seq.	748
Connected seq. ID	SFC233P
Connected seq.	>SFC233P.Seq CACTGTTGGCCTACTGGAAATTTTTATTTTTAGTAACAATACAAATATAAGATTTCTTAT ATTGGATACGTGGTGTACTTTTGTGTTTGGGTGGATTTTATTATTTATTTATTTTAATCA TCATTTTTATTTGTAATATATTTCACTTTTATCACACAAAACACACACAAAACACACACT CACAAAAACACACACTCACACATAAATAAATACACAATAATAAAAGAAGAAAGAAAATGG AGAAAAGAAAGAGTATATTTTTTGCAAATGATAGTGAAGATAATACATCATCAGGAGATT TAAGTAGTTTTACAAAACGTGGTACAATTACACCAGGTAAGATTGCAAATGCACGTGAAG GAGAGTTATCACAAATGATTGATGTTGAATCGGAACAGAAATATCAAGAAATTATTGAAC TTTTAGTTACAGGTGGTTATTTTAGAGCACGTATTTCAGGTTTATCACCATTTGATAAAG TTGTTGGTGGCATGGCTTGGTCAATCACTGCTTCAAATGTTGATGTTGACGCTGATTTAT TCTTTCAAGAAAATTCAAATATTAAACAAAAAGTA----------TAGAGAGACAGAGAA ATTGGATGCATTGGAAACACCAGAGAATACTAAAGCATTACAAGCACTACGTTCATTGGT ACTATTGAATGAAACATTGATTGCTCAAGAGGAACTTTTCAAACAATCTTGTAAACGTCA AATGGTAGAATATAAACAAAAGATCGAACAACTCTTATCACAAGATGCCTCTACTCAAGA GGATCTTCAAGACAGTGATAGACAACAACAAATTCAACAAGCATTCGATAGTGATATTGG TAAATTAAAGAAATTGAAATTATTACTCAATAAAAAGAATAGAGATATCTCTTTGATTCA ACGTTATCTCGATGAATTACCATCTCGTGCCGAACTATTACAATATCAAAGACAATTTGT TGAATTATCCGAACAAAGTAGTTCGAAATTAACCGAAACCAGACAATACTATACAACCTA CAATACCTTTGAAGATAAGAAAACACTTTTAGAAAATGAACTCTCAATTCTCAATTCAAT TCAATCCAAATATAGCATAGCTATGTCTTCAACAAATAATAAAGAATTATTCATTAAATC AATGGATCAAATCATTGATGGTATTCAACAAGTTTTAGATAAATCTGAAAATAAATGGAA TGTTGAAAAAGTTCGTCATGATACTTTATCTGGTCAATATATGACTTTATTAGATCAAGA GAGAAATTATTATAAATTAACAAAAGACTTGAAGAAGAATGTAGAAAGAATAATTATTAA TTAAAAAATTAAA
Length of connected seq.	1323
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas