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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC208
Library SF
(Link to library)
Clone ID SFC208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16412-1
Original site URL
Representative seq. ID SFC208P
(Link to Original site)
Representative DNA sequence 
>SFC208 (SFC208Q) /CSM/SF/SFC2-A/SFC208Q.Seq.d/
GCGTATGTGGTCTAGTGGTATGATGCATCCCTGCCACGGATGCGAACTGGGTTCGTTTCC
CAGCATACGCACCAATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGT
GAAAACGCACAAAAGGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAA
GATTATAATTCAGCAGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCAT
ATTTTATATAGTAATAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTA
ACAGATGCAAAGAAAGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAA
ACCAATGCACTCTATAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGT
TTAAAGATTGATCCAACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCC
ACAACTGGTGCAAAAGAXXXXXXXXXXTGTGGATCAATCAATCATTGAAAAGAATAAAGG
TGTTGAACACTTTAAAAAAGGTGAATTCCCAGAGGCAATCAAATGTTTCGAGGAGGCAAT
TCGTCGTAATCCAAAGGACCACACAATCTATAGCAATCGTTCCGCAGCCTATAGCAAATT
GTTAGAATATAAATTGGCAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACATT
CATCAAAGGTTACATTAGAAAAGGTACTGCCTTATTCGCAATGAGAGAGTATCAACAAGC
TTTGGAGGTCTATGATCAAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGATCT
CTCAAGAAAGACTGTCGCCGCTCTCACTAAATTACAAAGTACTCTCACCGATGAAGAACG
TCTTCAACAAGCTGCCAAAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATGAA
TCAAATCTTAAAAGATATGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAATCC
ATTAATTANGGCTAAATTCCAAAAATTAGTTAATGCTGGTATAGTTAAATTAGGTTAAAT
ATTTAATAAAATAATTTTAAAAAAAAAAAATTAAAAAATTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ayvv*WYDASLPRMRTGFVSQHTHQFLDLQNIYIKNKKMSENAQKATEFKNQGNAAFSSK
DYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRE
TNALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDAQYATTGAK---

---VDQSIIEKNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLA
IKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVA
ALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQILKDMSENPAAAQDHLKNPLIXAKF
QKLVNAGIVKLG*ifnkiilkkkn*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
ayvv*WYDASLPRMRTGFVSQHTHQFLDLQNIYIKNKKMSENAQKATEFKNQGNAAFSSK
DYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRE
TNALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDAQYATTGAK---

---cgsinh*ke*rc*tl*kr*iprgnqmfrggnss*skgphnl*qsfrsl*qivri*ig
nqgcr*myriganihqrlh*kryclirnervstsfggl*srfkn*sqqs*tlgslkkdcr
rsh*itkyshr*rtsstscqrsrnskdsl*snhesnlkryv*kscccsrss*ksinxg*i
pkis*cwys*irlni**nnfkkkklkn*

Frame B:
rmwssgmmhpchgcelgsfpsirtnfwtckiyi*kikk*vkthkrqqnlkikvmlhfqvk
iiiqq*nvlikqln*iqviifyividqhhylh*irmkmh*qmqrkqln*nqigqkvi*ek
pmhsinwvvskkqrnqqrlv*rliqpinn*kmh*rmhntpqlvqk---

---VDQSIIEKNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLA
IKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVA
ALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQILKDMSENPAAAQDHLKNPLIXAKF
QKLVNAGIVKLG*ifnkiilkkkn*ki

Frame C:
vcglvv*cipatdanwvrfpayapifglakyiykk*kne*krtkgnri*ksr*ccifk*r
l*fssemf*ssn*irsk*syfi***isiitcir*e*rcinrckesn*ietrlvkrlfkrn
qctl*igsfrrsreisrgwfkd*snqstirrcirgctirhnwckr---

---winqslkrikvlntlkkvnsqrqsnvsrrqfvviqrttqsiaivpqpianc*ninwq
srmpinvsnwsqhsskvtlekvlpysq*esinklwrsmikv*elkptilnswisqerlsp
lslnykvlspmknvfnklpkiqkfkrfsliqs*iks*kiclkillllkiilkih*lxlns
kn*lmlv*ln*vkylik*f*kkkikkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC208 (SFC208Q) /CSM/SF/SFC2-A/SFC208Q.Seq.d/                       1883   0.0
AFH489 (AFH489Q) /CSM/AF/AFH4-D/AFH489Q.Seq.d/                       1158   0.0
AFG635 (AFG635Q) /CSM/AF/AFG6-B/AFG635Q.Seq.d/                       1158   0.0
SFG279 (SFG279Q) /CSM/SF/SFG2-D/SFG279Q.Seq.d/                       1152   0.0
SFB592 (SFB592Q) /CSM/SF/SFB5-D/SFB592Q.Seq.d/                       1152   0.0
SFE324 (SFE324Q) /CSM/SF/SFE3-A/SFE324Q.Seq.d/                       1148   0.0
AFH638 (AFH638Q) /CSM/AF/AFH6-B/AFH638Q.Seq.d/                       1140   0.0
SFJ804 (SFJ804Q) /CSM/SF/SFJ8-A/SFJ804Q.Seq.d/                       1136   0.0
SFB209 (SFB209Q) /CSM/SF/SFB2-A/SFB209Q.Seq.d/                       1136   0.0
AFO324 (AFO324Q) /CSM/AF/AFO3-A/AFO324Q.Seq.d/                       1130   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   135   1e-27  1
AF482382|AF482382.1 Dictyostelium discoideum ABC transporter AbcG3 (abcG3) gene, complete cds.   133   6e-27  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   133   6e-27  1
BZ391721|BZ391721.1 EINCP92TR EI_10_12_KB Entamoeba invadens genomic clone EINCP92, DNA sequence.    56   0.001  1
BH131424|BH131424.1 ENTPC18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.001  2
BI513962|BI513962.1 BB160014A11E04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A11E04 5', mRNA sequence.    50   0.003  2
BI513877|BI513877.1 BB160014A10E04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A10E04 5', mRNA sequence.    50   0.003  2
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    34   0.014  14
BH138033|BH138033.1 ENTNM09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   0.017  1
AC115646|AC115646.4 Rattus norvegicus clone CH230-290I1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46   0.043  7
dna update 2003.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DA8) RecName: Full=Protein STIP1 homolog;                         363   e-108
FB910851_1(FB910851|pid:none) Sequence 130124 from Patent WO2008...   192   2e-58
EF147519_1(EF147519|pid:none) Populus trichocarpa clone WS0123_C...   194   1e-57
BT039771_1(BT039771|pid:none) Zea mays full-length cDNA clone ZM...   192   3e-57
AF512999_1(AF512999|pid:none) Medicago sativa TPR1 (tpr1) mRNA, ...   187   4e-57
AP008210_1442(AP008210|pid:none) Oryza sativa (japonica cultivar...   194   1e-56
AC025416_2(AC025416|pid:none) Genomic sequence for Arabidopsis t...   186   2e-56
EU972939_1(EU972939|pid:none) Zea mays clone 390399 heat shock p...   190   6e-56
FB910833_1(FB910833|pid:none) Sequence 130106 from Patent WO2008...   191   7e-56
FB910853_1(FB910853|pid:none) Sequence 130126 from Patent WO2008...   191   7e-56
protein update 2009. 5.22
PSORT 

 psg: 0.79  gvh: 0.31  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SFC208 is nuc
5' end seq. ID SFC208F
5' end seq. 
>SFC208F.Seq
GCGTATGTGGTCTAGTGGTATGATGCATCCCTGCCACGGATGCGAACTGGGTTCGTTTCC
CAGCATACGCACCAATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGT
GAAAACGCACAAAAGGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAA
GATTATAATTCAGCAGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCAT
ATTTTATATAGTAATAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTA
ACAGATGCAAAGAAAGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAA
ACCAATGCACTCTATAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGT
TTAAAGATTGATCCAACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCC
ACAACTGGTGCAAAAGA----------
Length of 5' end seq. 497
3' end seq. ID SFC208Z
3' end seq. 
>SFC208Z.Seq
----------TGTGGATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAA
AAGGTGAATTCCCAGAGGCAATCAAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGG
ACCACACAATCTATAGCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGG
CAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTA
GAAAAGGTACTGCCTTATTCGCAATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATC
AAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCG
CCGCTCTCACTAAATTACAAAGTACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCA
AAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATA
TGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAATCCATTAATTANGGCTAAAT
TCCAAAAATTAGTTAATGCTGGTATAGTTAAATTAGGTTAAATATTTAATAAAATAATTT
TAAAAAAAAAAAATTAAAAAATTAA
Length of 3' end seq. 615
Connected seq. ID SFC208P
Connected seq. 
>SFC208P.Seq
GCGTATGTGGTCTAGTGGTATGATGCATCCCTGCCACGGATGCGAACTGGGTTCGTTTCC
CAGCATACGCACCAATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGT
GAAAACGCACAAAAGGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAA
GATTATAATTCAGCAGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCAT
ATTTTATATAGTAATAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTA
ACAGATGCAAAGAAAGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAA
ACCAATGCACTCTATAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGT
TTAAAGATTGATCCAACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCC
ACAACTGGTGCAAAAGA----------TGTGGATCAATCAATCATTGAAAAGAATAAAGG
TGTTGAACACTTTAAAAAAGGTGAATTCCCAGAGGCAATCAAATGTTTCGAGGAGGCAAT
TCGTCGTAATCCAAAGGACCACACAATCTATAGCAATCGTTCCGCAGCCTATAGCAAATT
GTTAGAATATAAATTGGCAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACATT
CATCAAAGGTTACATTAGAAAAGGTACTGCCTTATTCGCAATGAGAGAGTATCAACAAGC
TTTGGAGGTCTATGATCAAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGATCT
CTCAAGAAAGACTGTCGCCGCTCTCACTAAATTACAAAGTACTCTCACCGATGAAGAACG
TCTTCAACAAGCTGCCAAAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATGAA
TCAAATCTTAAAAGATATGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAATCC
ATTAATTANGGCTAAATTCCAAAAATTAGTTAATGCTGGTATAGTTAAATTAGGTTAAAT
ATTTAATAAAATAATTTTAAAAAAAAAAAATTAAAAAATTAA
Length of connected seq. 1112
Full length Seq ID -
Full length Seq. -
Length of full length seq. -