SFC203
Library SF
(Link to library)
Clone ID SFC203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16289-1
Original site URL
Representative seq. ID SFC203P
(Link to Original site)
Representative DNA sequence
>SFC203 (SFC203Q) /CSM/SF/SFC2-A/SFC203Q.Seq.d/
GTGGTGTATTTGTAAATTAAAAACAACAATAATAATTAATTATATATTAACATTAAATCA
ATATTCAAAAAGGCATTATAAATAAAATCGATTTTATTTTATTTTTTCCCTTTTTTGTAC
AATAACAATTATCAATAACGCAAAAAAAAAAXXXXXXXXXXACACAAGTTTATGGTTTTT
ATGATGAATGCCAACAAAAATATGGTAATGTAAATGCTTGGAAATATTGTACAAGTGTTT
TCGATTTCTTAACTTTAGCTGCTATTATTGATGGTAAAGTACTTTGTGTTCATGGTGGTT
TATCACCAAAAGTACGTACTTTGGATCAAATTAGAATTATTTCAAGAAATTTAGAGATTC
CACATGAAGGTCCATTCTGTGATTTAATGTGGTCAGATCCAGAAGATATTGAACAATGGC
AACCATCACCAAGAGGTGCAGGTTGGTTATTCGGAAGTAAAGTCACTGCAGAGTTTGAAC
ATGTCAATGGTCTTAACCTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
wcicklkttiiinyiltlnqyskrhyk*NRFYFIFSLFCTITIINNAKKK---

---TQVYGFYDECQQKYGNVNAWKYCTSVFDFLTLAAIIDGKVLCVHGGLSPKVRTLDQI
RIISRNLEIPHEGPFCDLMWSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHVNGLNL


Translated Amino Acid sequence (All Frames)
Frame A:
vvyl*iknnnnn*lyiniksifkkal*iksilfyffpflynnnyq*rkkk---

---TQVYGFYDECQQKYGNVNAWKYCTSVFDFLTLAAIIDGKVLCVHGGLSPKVRTLDQI
RIISRNLEIPHEGPFCDLMWSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHVNGLNL

Frame B:
wcicklkttiiinyiltlnqyskrhyk*NRFYFIFSLFCTITIINNAKKK---

---hkfmvfmmnanknmvm*mlgnivqvfsis*l*llllmvkyfvfmvvyhqkyvlwikl
elfqei*rfhmkvhsvi*cgqiqkilnngnhhqevqvgysevkslqslnmsmvlts

Frame C:
gvfvn*kqq**liiy*h*iniqkgiinkidfilffpffvq*qlsitqkk---

---tslwfl**mptkiw*ckcleilykcfrflnfscyy*w*stlcswwfitkstyfgsn*
nyfkkfrdst*rsil*fnvvrsrry*tmatitkrcrlvirk*shcrv*tcqws*p

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC203 (SFC203Q) /CSM/SF/SFC2-A/SFC203Q.Seq.d/ 674 0.0
VSJ850 (VSJ850Q) /CSM/VS/VSJ8-C/VSJ850Q.Seq.d/ 666 0.0
VSJ277 (VSJ277Q) /CSM/VS/VSJ2-D/VSJ277Q.Seq.d/ 666 0.0
VFM218 (VFM218Q) /CSM/VF/VFM2-A/VFM218Q.Seq.d/ 666 0.0
VFK489 (VFK489Q) /CSM/VF/VFK4-D/VFK489Q.Seq.d/ 666 0.0
VFK453 (VFK453Q) /CSM/VF/VFK4-C/VFK453Q.Seq.d/ 666 0.0
VFK446 (VFK446Q) /CSM/VF/VFK4-B/VFK446Q.Seq.d/ 666 0.0
SSK166 (SSK166Q) /CSM/SS/SSK1-C/SSK166Q.Seq.d/ 666 0.0
SSJ104 (SSJ104Q) /CSM/SS/SSJ1-A/SSJ104Q.Seq.d/ 666 0.0
SSI264 (SSI264Q) /CSM/SS/SSI2-C/SSI264Q.Seq.d/ 666 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF176121|AF176121.1 Dictyostelium discoideum protein phosphatase 6 catalytic subunit (pppD) mRNA, complete cds. 666 0.0 3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 464 0.0 9
AF161253|AF161253.1 Dictyostelium discoideum protein phosphatase 4 catalytic subunit (pppC) mRNA, complete cds. 68 3e-31 5
AZ547487|AZ547487.1 ENTEE91TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 72 7e-26 4
AZ683356|AZ683356.1 ENTIR84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 72 8e-22 4
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence. 68 3e-20 7
AL439996|AL439996.1 T3 end of clone BD0AA009C10 of library BD0AA from strain CBS 94 of Candida tropicalis. 72 5e-20 4
BI507201|BI507201.1 BB170030B20B04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170030B20B04 5', mRNA sequence. 50 3e-15 3
BM836085|BM836085.1 K-EST0111577 S9SNU601 Homo sapiens cDNA clone S9SNU601-65-D12 5', mRNA sequence. 50 1e-12 3
BQ267857|BQ267857.1 ij95c10.x1 Human insulinoma Homo sapiens cDNA clone IMAGE: 5779195 3' similar to SW:P2AA_HUMAN P05323 SERINE/THREONINE PROTEIN PHOSPHATASE PP2A-ALPHA, CATALYTIC SUBUNIT ;, mRNA sequence. 50 1e-12 3
dna update 2003.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U9A3) RecName: Full=Serine/threonine-protein phosphatase 6 ca... 245 5e-64
AF176121_1(AF176121|pid:none) Dictyostelium discoideum protein p... 245 5e-64
T17012(T17012) phosphoprotein phosphatase (EC 3.1.3.16) - apple ... 211 1e-53
(Q8LSN3) RecName: Full=Phytochrome-associated serine/threonine p... 211 1e-53
(Q9SX52) RecName: Full=Phytochrome-associated serine/threonine p... 210 1e-53
(Q9LHE7) RecName: Full=Phytochrome-associated serine/threonine p... 209 2e-53
EF146829_1(EF146829|pid:none) Populus trichocarpa clone WS01214_... 208 5e-53
(P36614) RecName: Full=Serine/threonine-protein phosphatase ppe1... 201 6e-51
CP001324_759(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 199 2e-50
CR954218_124(CR954218|pid:none) Ostreococcus tauri strain OTTH05... 198 5e-50
protein update 2009. 5.22
PSORT

psg: 0.97 gvh: 0.57 alm: 0.34 top: 0.47 tms: 0.00 mit: 0.35 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

24.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SFC203 is mit

5' end seq. ID SFC203F
5' end seq.
>SFC203F.Seq
GTGGTGTATTTGTAAATTAAAAACAACAATAATAATTAATTATATATTAACATTAAATCA
ATATTCAAAAAGGCATTATAAATAAAATCGATTTTATTTTATTTTTTCCCTTTTTTGTAC
AATAACAATTATCAATAACGCAAAAAAAAAA----------
Length of 5' end seq. 151
3' end seq. ID SFC203Z
3' end seq.
>SFC203Z.Seq
----------ACACAAGTTTATGGTTTTTATGATGAATGCCAACAAAAATATGGTAATGT
AAATGCTTGGAAATATTGTACAAGTGTTTTCGATTTCTTAACTTTAGCTGCTATTATTGA
TGGTAAAGTACTTTGTGTTCATGGTGGTTTATCACCAAAAGTACGTACTTTGGATCAAAT
TAGAATTATTTCAAGAAATTTAGAGATTCCACATGAAGGTCCATTCTGTGATTTAATGTG
GTCAGATCCAGAAGATATTGAACAATGGCAACCATCACCAAGAGGTGCAGGTTGGTTATT
CGGAAGTAAAGTCACTGCAGAGTTTGAACATGTCAATGGTCTTAACCTCA
Length of 3' end seq. 340
Connected seq. ID SFC203P
Connected seq.
>SFC203P.Seq
GTGGTGTATTTGTAAATTAAAAACAACAATAATAATTAATTATATATTAACATTAAATCA
ATATTCAAAAAGGCATTATAAATAAAATCGATTTTATTTTATTTTTTCCCTTTTTTGTAC
AATAACAATTATCAATAACGCAAAAAAAAAA----------ACACAAGTTTATGGTTTTT
ATGATGAATGCCAACAAAAATATGGTAATGTAAATGCTTGGAAATATTGTACAAGTGTTT
TCGATTTCTTAACTTTAGCTGCTATTATTGATGGTAAAGTACTTTGTGTTCATGGTGGTT
TATCACCAAAAGTACGTACTTTGGATCAAATTAGAATTATTTCAAGAAATTTAGAGATTC
CACATGAAGGTCCATTCTGTGATTTAATGTGGTCAGATCCAGAAGATATTGAACAATGGC
AACCATCACCAAGAGGTGCAGGTTGGTTATTCGGAAGTAAAGTCACTGCAGAGTTTGAAC
ATGTCAATGGTCTTAACCTCA
Length of connected seq. 491
Full length Seq ID -
Full length Seq. -
Length of full length seq. -