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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC194
Library SF
(Link to library)
Clone ID SFC194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13881-1
Original site URL
Representative seq. ID SFC194P
(Link to Original site)
Representative DNA sequence 
>SFC194 (SFC194Q) /CSM/SF/SFC1-D/SFC194Q.Seq.d/
CACACACTTACACAAAATATTTACTATTTTAAATTATATCTAAATCCGACAACAACANTA
ACAATAACAACANCAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTNGXXXXXX
XXXXAACAACAATATGTTAGTCANCCACAAGAAGACATTGTAAATAGAGAACATAGTGTG
CCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGT
GTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTA
AAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTT
CACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTC
GATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAGCAA
GCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAA
GTTTCAAGTTTTGGTACTTTTATTAAACANGAAGNNCAACNAATTC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
thlhkiftilnyi*irqqx*q*qxqpil*YTYKYKIMNPDFTVYVSNISLKANTKTV---

---QQYVSXPQEDIVNREHSVPDNERSKXSVVASIIAAGYSVGQDAAIKARQVDEEHMIS
LKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVERANALDERFQISGFFKSASDMISQ
QASNLMKAAEENSTVSPIVNKVSSFGTFIKXEXQXI
Translated Amino Acid sequence (All Frames) 
Frame A:
htltqniyyfklylnptttxtittxthsliyi*i*nnesrfhslcfkyfiesky*nsx--
-

---nnnmlvxhkktl*ienivcqimkevxplllhqllqqvivldktlplkhvklmkni*f
h*nlklelklskqkqmkliitftflrvplplrvql*reqmhsmkdsksqvslrvqvi*sl
sklpi**kqpkkivqfhqs*ikfqvlvlllnxkxnxf

Frame B:
thlhkiftilnyi*irqqx*q*qxqpil*YTYKYKIMNPDFTVYVSNISLKANTKTV---

---ttic*sxtrrhck*rt*car**kk*xlcccinycsrl*cwtrrch*stss**rtydf
ikt*sws*scqsksk*n***pshf*ecrch*gcscreskctr*kipnlrfl*eck*ydls
asfqfnessrrk*ysftnrk*sfkfwyfy*txxxtn

Frame C:
htytkyllf*iisksdnnxnnnnxnpffnihinik**iqisqfmfqifh*kqilkqx---

---QQYVSXPQEDIVNREHSVPDNERSKXSVVASIIAAGYSVGQDAAIKARQVDEEHMIS
LKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVERANALDERFQISGFFKSASDMISQ
QASNLMKAAEENSTVSPIVNKVSSFGTFIKXEXQXI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC194 (SFC194Q) /CSM/SF/SFC1-D/SFC194Q.Seq.d/                       1027   0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        872   0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/                        872   0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/                        872   0.0
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/                        872   0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/                        872   0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                        872   0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/                        872   0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/                        872   0.0
CHB569 (CHB569Q) /CSM/CH/CHB5-C/CHB569Q.Seq.d/                        872   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46   9e-05  7
AC096704|AC096704.7 Rattus norvegicus clone CH230-191J16, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.001  4
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    34   0.003  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.003  14
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40   0.003  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   0.004  11
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   0.004  11
AC011709|AC011709.11 Homo sapiens chromosome 18, clone RP11-500H12, complete sequence.    32   0.005  10
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    38   0.007  13
AP001593|AP001593.3 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-869O1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36   0.010  8
dna update 2003.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC150647_11(AC150647|pid:none) Medicago truncatula clone mth2-65...    55   1e-06
AM458618_1(AM458618|pid:none) Vitis vinifera contig VV78X062814....    52   2e-05
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c...    52   2e-05
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m...    52   2e-05
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g...    52   2e-05
AM477014_3(AM477014|pid:none) Vitis vinifera contig VV78X023314....    52   2e-05
AC183492_7(AC183492|pid:none) Brassica oleracea Contig G, comple...    50   4e-05
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen...    50   5e-05
BT065499_1(BT065499|pid:none) Zea mays full-length cDNA clone ZM...    49   1e-04
AK117709_1(AK117709|pid:none) Arabidopsis thaliana At5g32450 mRN...    48   2e-04
protein update 2009. 5.22
PSORT 

 psg: 0.84  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for SFC194 is cyt
5' end seq. ID SFC194F
5' end seq. 
>SFC194F.Seq
CACACACTTACACAAAATATTTACTATTTTAAATTATATCTAAATCCGACAACAACANTA
ACAATAACAACANCAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTNG------
----
Length of 5' end seq. 174
3' end seq. ID SFC194Z
3' end seq. 
>SFC194Z.Seq
----------AACAACAATATGTTAGTCANCCACAAGAAGACATTGTAAATAGAGAACAT
AGTGTGCCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGCAGCAGGT
TATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATT
TCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAAT
AACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAAT
GCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCT
CAGCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTA
AATAAAGTTTCAAGTTTTGGTACTTTTATTAAACANGAAGNNCAACNAATTC
Length of 3' end seq. 462
Connected seq. ID SFC194P
Connected seq. 
>SFC194P.Seq
CACACACTTACACAAAATATTTACTATTTTAAATTATATCTAAATCCGACAACAACANTA
ACAATAACAACANCAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTNG------
----AACAACAATATGTTAGTCANCCACAAGAAGACATTGTAAATAGAGAACATAGTGTG
CCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGT
GTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTA
AAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTT
CACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTC
GATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAGCAA
GCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAA
GTTTCAAGTTTTGGTACTTTTATTAAACANGAAGNNCAACNAATTC
Length of connected seq. 636
Full length Seq ID -
Full length Seq. -
Length of full length seq. -