SFC186
Library SF
(Link to library)
Clone ID SFC186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09871-1
Original site URL
Representative seq. ID SFC186Z
(Link to Original site)
Representative DNA sequence
>SFC186 (SFC186Q) /CSM/SF/SFC1-D/SFC186Q.Seq.d/
XXXXXXXXXXAAACACCAGATTTAATTTTCAAAGAACCAATCGATATCGTCAAAGGTATT
CGTCCAGAACAAACTAAAAACCTCGCTGAGAAATTAGGTTTCACCGGTGAGAAAGCAAAG
ATCGCTCAACAACAAATGGAAAACCTCTATCAATTATTCATCAAGAGTGATGCAACTCAA
GTCGAGATTAACCCATTCGCTGAAACCACCGATGGTCAAGTCATTTGTATGGATGCTAAA
ATCAATTTCGATGACAATGCCTCATTCCGTCAAAAGGAGATTTTCGAAATGAGAGATACC
GCCGAAGAGGATCCACGTGAGGTTGAAGCTGGTAAATTTGGTCTCAATTACATTGGTCTC
GATGGTAACATTGGTTGTATGGTTAATGGTGCTGGTTTGGCTATGGCCACCATGGATATC
ATTAAATTAAAGGGTGGTATCCCTGCTAATTTCCTCGATGTAGGTGGTAGTGCCTCTGAA
CAAGCCGTCACTGAAGCCTTCAAAATCCTCACTAAAGATCCAAGAGTTAAATGTTTACTC
GTAAACATTTTCGGTGGTATCATGAAATGTGATATCATTGCCTCTGGTATCGTAAATGCT
TCAAAACAAGTTGGTCTTAAAATTCCATTAGTTGTACGTTTAGAAGGTACAAATGTAAAC
ATTGGTAAAGAAATCTTGGAAAAATCTGGTTTAAATATTACTTCTGCTAGNATTTAGATG
ATGCTGCTATTAAAGCTGTTAATGTTTAAAAAAAAATTAAATAAAAAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---TPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLFIKSDATQV
EINPFAETTDGQVICMDAKINFDDNASFRQKEIFEMRDTAEEDPREVEAGKFGLNYIGLD
GNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKILTKDPRVKCLLV
NIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEILEKSGLNITSAXI*mm
lllkllmfkkklnkk


Translated Amino Acid sequence (All Frames)
Frame A:
---ntrfnfqrtnryrqryssrtn*kpr*eirfhr*eskdrsttngkplsiihqe*cnss
rd*pir*nhrwsshlygc*nqfr*qclipskgdfrneryrrrgst*g*sw*iwsqlhwsr
w*hwlyg*wcwfgyghhgyh*ikgwypc*fprcrw*cl*tsrh*slqnph*rsks*mftr
khfrwyhem*yhclwyrkcfktsws*nsisctfrrykckhw*rnlgkiwfkyyfc*xldd
aaikavnv*kkik*k


Frame B:
---TPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLFIKSDATQV
EINPFAETTDGQVICMDAKINFDDNASFRQKEIFEMRDTAEEDPREVEAGKFGLNYIGLD
GNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKILTKDPRVKCLLV
NIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEILEKSGLNITSAXI*mm
lllkllmfkkklnkk


Frame C:
---hqi*fsknqsisskvfvqnklktslrn*vspvrkqrslnnkwktsinyssrvmqlks
rlthslkppmvksfvwmlksismtmphsvkrrfsk*eippkrihvrlklvnlvsitlvsm
vtlvvwlmvlvwlwppwisln*rvvsllissm*vvvplnkpslkpsksslkiqelnvys*
tfsvvs*nvislplvs*mlqnklvlkfh*lyv*kvqm*tlvkkswknlv*illllxfr*c
cy*sc*clkkn*ikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK777 (SFK777Q) /CSM/SF/SFK7-D/SFK777Q.Seq.d/ 1455 0.0
SFC186 (SFC186Q) /CSM/SF/SFC1-D/SFC186Q.Seq.d/ 1455 0.0
SFH344 (SFH344Q) /CSM/SF/SFH3-B/SFH344Q.Seq.d/ 1443 0.0
VFC521 (VFC521Q) /CSM/VF/VFC5-A/VFC521Q.Seq.d/ 1441 0.0
AFG227 (AFG227Q) /CSM/AF/AFG2-B/AFG227Q.Seq.d/ 1439 0.0
AFI855 (AFI855Q) /CSM/AF/AFI8-C/AFI855Q.Seq.d/ 1415 0.0
AFF274 (AFF274Q) /CSM/AF/AFF2-D/AFF274Q.Seq.d/ 1386 0.0
VFF668 (VFF668Q) /CSM/VF/VFF6-C/VFF668Q.Seq.d/ 1380 0.0
AFK346 (AFK346Q) /CSM/AF/AFK3-B/AFK346Q.Seq.d/ 1376 0.0
VFD829 (VFD829Q) /CSM/VF/VFD8-B/VFD829Q.Seq.d/ 1364 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1388 0.0 2
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence. 62 5e-32 9
X84222|X84222.2 Neocallimastix frontalis mRNA for beta-succinyl CoA synthetase precursor. 74 4e-21 4
AF493055|AF493055.1 Neocallimastix patriciarum succinyl-CoA synthetase, beta subunit (scsB) mRNA, complete cds. 74 5e-21 4
AX621832|AX621832.1 Sequence 4795 from Patent WO02094868. 52 4e-19 4
AR354123|AR354123.1 Sequence 241 from patent US 6593114. 52 3e-17 4
BJ519880|BJ519880.1 Oryzias latipes cDNA clone:MF01SSB014A03, 5' end single read. 70 3e-16 2
BJ532800|BJ532800.1 Oryzias latipes cDNA clone:MF01SSB015A03, 3' end single read. 70 3e-16 2
BJ520215|BJ520215.1 Oryzias latipes cDNA clone:MF01SSB015A03, 5' end single read. 70 3e-16 2
AP003133|AP003133.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 5/10. 52 6e-16 8
dna update 2003.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115594_9(AC115594|pid:none) Dictyostelium discoideum chromosom... 313 3e-84
(Q55AI5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 313 3e-84
BT039713_1(BT039713|pid:none) Zea mays full-length cDNA clone ZM... 306 6e-82
(Q6K9N6) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 305 8e-82
EF530042_1(EF530042|pid:none) Caragana jubata succinyl-CoA ligas... 303 5e-81
(O82662) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 299 6e-80
AY087596_1(AY087596|pid:none) Arabidopsis thaliana clone 36904 m... 297 3e-79
DQ200398_1(DQ200398|pid:none) Solanum tuberosum clone 071C05 suc... 295 1e-78
BC084473_1(BC084473|pid:none) Xenopus tropicalis hypothetical LO... 295 1e-78
DQ294279_1(DQ294279|pid:none) Solanum tuberosum clone 180E05 suc... 295 1e-78
protein update 2009. 5.22
PSORT

psg: 0.75 gvh: 0.34 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SFC186 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC186Z
3' end seq.
>SFC186Z.Seq
----------AAACACCAGATTTAATTTTCAAAGAACCAATCGATATCGTCAAAGGTATT
CGTCCAGAACAAACTAAAAACCTCGCTGAGAAATTAGGTTTCACCGGTGAGAAAGCAAAG
ATCGCTCAACAACAAATGGAAAACCTCTATCAATTATTCATCAAGAGTGATGCAACTCAA
GTCGAGATTAACCCATTCGCTGAAACCACCGATGGTCAAGTCATTTGTATGGATGCTAAA
ATCAATTTCGATGACAATGCCTCATTCCGTCAAAAGGAGATTTTCGAAATGAGAGATACC
GCCGAAGAGGATCCACGTGAGGTTGAAGCTGGTAAATTTGGTCTCAATTACATTGGTCTC
GATGGTAACATTGGTTGTATGGTTAATGGTGCTGGTTTGGCTATGGCCACCATGGATATC
ATTAAATTAAAGGGTGGTATCCCTGCTAATTTCCTCGATGTAGGTGGTAGTGCCTCTGAA
CAAGCCGTCACTGAAGCCTTCAAAATCCTCACTAAAGATCCAAGAGTTAAATGTTTACTC
GTAAACATTTTCGGTGGTATCATGAAATGTGATATCATTGCCTCTGGTATCGTAAATGCT
TCAAAACAAGTTGGTCTTAAAATTCCATTAGTTGTACGTTTAGAAGGTACAAATGTAAAC
ATTGGTAAAGAAATCTTGGAAAAATCTGGTTTAAATATTACTTCTGCTAGNATTTAGATG
ATGCTGCTATTAAAGCTGTTAATGTTTAAAAAAAAATTAAATAAAAAAG
Length of 3' end seq. 759
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -