SFC182 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFC182
Library	SF (Link to library)
Clone ID	SFC182 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13965-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFC1-D/SFC182Q.Seq.d/
Representative seq. ID	SFC182E (Link to Original site)
Representative DNA sequence	>SFC182 (SFC182Q) /CSM/SF/SFC1-D/SFC182Q.Seq.d/ AAATAATTTATATATATAAAAAAATGAGATTTTCATACATCATTTGTTTAATCTTTGTAT CTTTTTACTTTGCTTCAGTTTGTTTAGGTTCATTCCTTGATAAACCAGTTTTAGATGATA ACCTCATCAATTCAATCAATAATAATAAAAAATCATCATGGACTGCCCATAGAAATAAAA ATTTCGAAGGTAAGACTTTTGGTGATATCATTGGTATGATGGGTACTAAAAAAACTGCTG CTCCATTCAAATTAACTGAAAATGGTGAAGAACTCAAAGGTTCAATCCCAACTTCATTCG ATTCTCGTGTCCAATGGCCAGACTGTATCCACCCAATCCTCAACCAAGAACAATGTGGTT CATGTTGGGCCTTTTCTTCATCTGAAGTTTTAAGTGATAGATTATGTATTGCCTCAAATA ATAAAACTAACCCAGGTGCTCTCAGTCCACAAACTTTAGTTGCTTGTGATGTATATGGTA ATGATGGTTGTAGTGGTGGTATCCCACAATTAGCTTGGGAATATATGGAACTTAAAGGTT TACCAACTGACTCATGCGTCCCATACACTGCTGGTAACGGTACTGTCTACTCTTGTCAAA GATCATGTTCCGATAGTGAAGATTACAGTTTATACAGAGCTAAGCCATTCACCTTAAAGA CTTGCTCTTCAGTTCAATGTATCCAAGAAAACATTTTAGCTTATGGTCCAATCGTTGGTA CTATGGAAGTTTATGAAGATTTTATGAGCTACAGCTCAGGTGTTTACGTTATGACTCCAG GTTCATCTTATTAGGTGGTCATGCTATTAAAATTGTTGGTTGGGGCTTTGATCAAACCTC TCAATTAAACTACTGGATTGTTGCTAATTCATGGGGTGCTGACTGGGGTCAACAAGGTTT CTTTTTCATTTCAATGGAAACTTGTTCAATTTCTAGTGATGCAAGTGCTGCCGAAGCCCG TGTTTAAATTGTTTCAAATAAAATTTCATTTACACATTAATAATTTT
sequence update	2001. 6. 9
Translated Amino Acid sequence	IIYIYKKMRFSYIICLIFVSFYFASVCLGSFLDKPVLDDNLINSINNNKKSSWTAHRNKN FEGKTFGDIIGMMGTKKTAAPFKLTENGEELKGSIPTSFDSRVQWPDCIHPILNQEQCGS CWAFSSSEVLSDRLCIASNNKTNPGALSPQTLVACDVYGNDGCSGGIPQLAWEYMELKGL PTDSCVPYTAGNGTVYSCQRSCSDSEDYSLYRAKPFTLKTCSSVQCIQENILAYGPIVGT MEVYEDFMSYSSGVYVMTPGSSYvvmllkllvgalikplnttglllihgvltgvnkvs fsfqwklvqflvmqvlpkpvfklfqikfhlhinnf
Translated Amino Acid sequence (All Frames)	Frame A: kfiyikkdfhtsfvslylftllqfvvhslinqfmitssiqsiiiknhhglpieik iskvrllvislvwvlkklllhsnlkmvknskvqsqlhsilvsngqtvstqsstknnvv hvgpflhlkfvidyvlpqiikltqvlsvhklllvmymvmmvvvvvshnlgniwnlkv yqlthashtllvtvlstlvkdhvpivkitvytelshsprlalqfnvskktflmvqslv lwkfmkilataqvftllqvhlirwscyncwlglsnlsiklldccfmgclgstrf lfhfngnlfnf*ckccrspclncfknfiytlii Frame B: nnlyikneifihhlfnlcifllcfslfrfiptsfrphqfnq*kiimdcpkk frrdfwyhwydgyknccsiqinkwrtqrfnpnfirfscpmarlyppnpqprtmwf mlglffisfkimyclknprcsqstnfsclciwwlwwyptislgiygtrf tnlmrpihcwryclllskimfrrlqfiqsaihlkdllfssmyprkhfslwsnrwy ygslrfyelqlrclrydsrfillgghaikivgwgfdqtsqlnywivanswgadwgqqgf ffismetcsissdasaaearvivsnkisfth*f Frame C: IIYIYKKMRFSYIICLIFVSFYFASVCLGSFLDKPVLDDNLINSINNNKKSSWTAHRNKN FEGKTFGDIIGMMGTKKTAAPFKLTENGEELKGSIPTSFDSRVQWPDCIHPILNQEQCGS CWAFSSSEVLSDRLCIASNNKTNPGALSPQTLVACDVYGNDGCSGGIPQLAWEYMELKGL PTDSCVPYTAGNGTVYSCQRSCSDSEDYSLYRAKPFTLKTCSSVQCIQENILAYGPIVGT MEVYEDFMSYSSGVYVMTPGSSYvvmllkllvgalikpln*ttglllihgvltgvnkvs fsfqwklvqflvmqvlpkpvfklfqikfhlhinnf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFC182 (SFC182Q) /CSM/SF/SFC1-D/SFC182Q.Seq.d/ 1913 0.0 VFI135 (VFI135Q) /CSM/VF/VFI1-B/VFI135Q.Seq.d/ 1897 0.0 VFG553 (VFG553Q) /CSM/VF/VFG5-C/VFG553Q.Seq.d/ 1887 0.0 VFD411 (VFD411Q) /CSM/VF/VFD4-A/VFD411Q.Seq.d/ 1885 0.0 VFI602 (VFI602Q) /CSM/VF/VFI6-A/VFI602Q.Seq.d/ 1879 0.0 VFF125 (VFF125Q) /CSM/VF/VFF1-B/VFF125Q.Seq.d/ 1875 0.0 VFM316 (VFM316Q) /CSM/VF/VFM3-A/VFM316Q.Seq.d/ 1859 0.0 VSJ659 (VSJ659Q) /CSM/VS/VSJ6-C/VSJ659Q.Seq.d/ 1853 0.0 VFN281 (VFN281Q) /CSM/VF/VFN2-D/VFN281Q.Seq.d/ 1848 0.0 VHH551 (VHH551Q) /CSM/VH/VHH5-C/VHH551Q.Seq.d/ 1816 0.0
own update	2002.11.29
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CF779981\|CF779981.1 tad06b06.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:CATB_BOVIN P07688 CATHEPSIN B PRECURSOR ;, mRNA sequence. 52 1e-06 2 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 5e-05 16 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 3e-04 14 BX000475\|BX000475.6 Zebrafish DNA sequence from clone CH211-112P5. 38 0.006 9 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 0.016 16 AF409138\|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome. 38 0.032 10 AE014825\|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. 32 0.039 11 AC117891\|AC117891.5 Rattus norvegicus clone CH230-290B16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 0.044 7 BX004878\|BX004878.8 Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6. 38 0.044 10 AC117032\|AC117032.3 Rattus norvegicus clone CH230-207K17, * SEQUENCING IN PROGRESS *, 15 unordered pieces. 36 0.050 11
dna update	2003.12.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY204512_1(AY204512\|pid:none) Sterkiella histriomuscorum catheps... 146 5e-44 DQ363675_1(DQ363675\|pid:none) Streblomastix strix cathepsin B ge... 141 1e-43 AF483623_1(AF483623\|pid:none) Apriona germari cathepsin B mRNA, ... 128 3e-38 AF358667_1(AF358667\|pid:none) Oncorhynchus mykiss procathepsin B... 119 3e-38 EF474111_1(EF474111\|pid:none) Monocercomonoides sp. PA cathepsin... 131 4e-38 U51892_1(U51892\|pid:none) Ascaris suum cathepsin B-like cysteine... 120 1e-37 EF474109_1(EF474109\|pid:none) Monocercomonoides sp. PA cathepsin... 130 1e-37 AY737533_1(AY737533\|pid:none) Toxoptera citricida putative cathe... 125 2e-37 AY813193_1(AY813193\|pid:none) Schistosoma japonicum clone SJCHGC... 121 3e-37 AY553271_1(AY553271\|pid:none) Triatoma sordida cathepsin B-like ... 117 3e-37
protein update	2009. 7. 3
PSORT	psg: 0.98 gvh: 0.61 alm: 0.22 top: 0.13 tms: 0.07 mit: 0.37 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 1.15 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 20.0 %: Golgi 20.0 %: mitochondrial 20.0 %: nuclear 20.0 %: endoplasmic reticulum 12.0 %: cytoplasmic 4.0 %: extracellular, including cell wall 4.0 %: plasma membrane >> prediction for SFC182 is gol
5' end seq. ID	SFC182F
5' end seq.	>SFC182F.Seq AAATAATTTATATATATAAAAAAATGAGATTTTCATACATCATTTGTTTAATCTTTGTAT CTTTTTACTTTGCTTCAGTTTGTTTAGGTTCATTCCTTGATAAACCAGTTTTAGATGATA ACCTCATCAATTCAATCAATAATAATAAAAAATCATCATGGACTGCCCATAGAAATAAAA ATTTCGAAGGTAAGACTTTTGGTGATATCATTGGTATGATGGGTACTAAAAAAACTGCTG CTCCATTCAAATTAACTGAAAATGGTGAAGAACTCAAAGGTTCAATCCCAACTTCATTCG ATTCTCGTGTCCAATGGCCAGACTGTATCCACCCAATCCTCAACCAAGAACAATGTGGTT CATGTTGGGCCTTTTCTTCATCTGAAGTTTTAAGTGATAGATTATGTATTGCCTCAAATA ATAAAACTAACCCAGGTGCTCTCAGTCCACAAACTTTAGTTGCTTGTGATGTATATGGTA ATGATGGTTGTAGTGGTGGTATCCCACAATTAGCTTGGGAATATATGGAACTTAAAGGTT TACCAACTGACTCATGCGTCCCATACACTGCTGGTAACGGTACTGTCTACTCTTGTCAAA GATCATGTTCCGATAGTGAAGATTACAGT----------
Length of 5' end seq.	629
3' end seq. ID	SFC182Z
3' end seq.	>SFC182Z.Seq ----------AATGGCCAGACTGTATCCACCCAATCCTCAACCAAGAACAATGTGGTTCA TGTTGGGCCTTTTCTTCATCTGAAGTTTTAAGTGATAGATTATGTATTGCCTCAAATAAT AAAACTAACCCAGGTGCTCTCAGTCCACAAACTTTAGTTGCTTGTGATGTATATGGTAAT GATGGTTGTAGTGGTGGTATCCCACAATTAGCTTGGGAATATATGGAACTTAAAGGTTTA CCAACTGACTCATGCGTCCCATACACTGCTGGTAACGGTACTGTCTACTCTTGTCAAAGA TCATGTTCCGATAGTGAAGATTACAGTTTATACAGAGCTAAGCCATTCACCTTAAAGACT TGCTCTTCAGTTCAATGTATCCAAGAAAACATTTTAGCTTATGGTCCAATCGTTGGTACT ATGGAAGTTTATGAAGATTTTATGAGCTACAGCTCAGGTGTTTACGTTATGACTCCAGGT TCATCTTATTAGGTGGTCATGCTATTAAAATTGTTGGTTGGGGCTTTGATCAAACCTCTC AATTAAACTACTGGATTGTTGCTAATTCATGGGGTGCTGACTGGGGTCAACAAGGTTTCT TTTTCATTTCAATGGAAACTTGTTCAATTTCTAGTGATGCAAGTGCTGCCGAAGCCCGTG TTTAAATTGTTTCAAATAAAATTTCATTTACACATTAATAATTTT
Length of 3' end seq.	695
Connected seq. ID	SFC182P
Connected seq.	>SFC182P.Seq AAATAATTTATATATATAAAAAAATGAGATTTTCATACATCATTTGTTTAATCTTTGTAT CTTTTTACTTTGCTTCAGTTTGTTTAGGTTCATTCCTTGATAAACCAGTTTTAGATGATA ACCTCATCAATTCAATCAATAATAATAAAAAATCATCATGGACTGCCCATAGAAATAAAA ATTTCGAAGGTAAGACTTTTGGTGATATCATTGGTATGATGGGTACTAAAAAAACTGCTG CTCCATTCAAATTAACTGAAAATGGTGAAGAACTCAAAGGTTCAATCCCAACTTCATTCG ATTCTCGTGTCCAATGGCCAGACTGTATCCACCCAATCCTCAACCAAGAACAATGTGGTT CATGTTGGGCCTTTTCTTCATCTGAAGTTTTAAGTGATAGATTATGTATTGCCTCAAATA ATAAAACTAACCCAGGTGCTCTCAGTCCACAAACTTTAGTTGCTTGTGATGTATATGGTA ATGATGGTTGTAGTGGTGGTATCCCACAATTAGCTTGGGAATATATGGAACTTAAAGGTT TACCAACTGACTCATGCGTCCCATACACTGCTGGTAACGGTACTGTCTACTCTTGTCAAA GATCATGTTCCGATAGTGAAGATTACAGT----------AATGGCCAGACTGTATCCACC CAATCCTCAACCAAGAACAATGTGGTTCATGTTGGGCCTTTTCTTCATCTGAAGTTTTAA GTGATAGATTATGTATTGCCTCAAATAATAAAACTAACCCAGGTGCTCTCAGTCCACAAA CTTTAGTTGCTTGTGATGTATATGGTAATGATGGTTGTAGTGGTGGTATCCCACAATTAG CTTGGGAATATATGGAACTTAAAGGTTTACCAACTGACTCATGCGTCCCATACACTGCTG GTAACGGTACTGTCTACTCTTGTCAAAGATCATGTTCCGATAGTGAAGATTACAGTTTAT ACAGAGCTAAGCCATTCACCTTAAAGACTTGCTCTTCAGTTCAATGTATCCAAGAAAACA TTTTAGCTTATGGTCCAATCGTTGGTACTATGGAAGTTTATGAAGATTTTATGAGCTACA GCTCAGGTGTTTACGTTATGACTCCAGGTTCATCTTATTAGGTGGTCATGCTATTAAAAT TGTTGGTTGGGGCTTTGATCAAACCTCTCAATTAAACTACTGGATTGTTGCTAATTCATG GGGTGCTGACTGGGGTCAACAAGGTTTCTTTTTCATTTCAATGGAAACTTGTTCAATTTC TAGTGATGCAAGTGCTGCCGAAGCCCGTGTTTAAATTGTTTCAAATAAAATTTCATTTAC ACATTAATAATTTT
Length of connected seq.	1324
Full length Seq ID	SFC182E
Full length Seq.	>SFC182E.Seq AAATAATTTATATATATAAAAAAATGAGATTTTCATACATCATTTGTTTAATCTTTGTAT CTTTTTACTTTGCTTCAGTTTGTTTAGGTTCATTCCTTGATAAACCAGTTTTAGATGATA ACCTCATCAATTCAATCAATAATAATAAAAAATCATCATGGACTGCCCATAGAAATAAAA ATTTCGAAGGTAAGACTTTTGGTGATATCATTGGTATGATGGGTACTAAAAAAACTGCTG CTCCATTCAAATTAACTGAAAATGGTGAAGAACTCAAAGGTTCAATCCCAACTTCATTCG ATTCTCGTGTCCAATGGCCAGACTGTATCCACCCAATCCTCAACCAAGAACAATGTGGTT CATGTTGGGCCTTTTCTTCATCTGAAGTTTTAAGTGATAGATTATGTATTGCCTCAAATA ATAAAACTAACCCAGGTGCTCTCAGTCCACAAACTTTAGTTGCTTGTGATGTATATGGTA ATGATGGTTGTAGTGGTGGTATCCCACAATTAGCTTGGGAATATATGGAACTTAAAGGTT TACCAACTGACTCATGCGTCCCATACACTGCTGGTAACGGTACTGTCTACTCTTGTCAAA GATCATGTTCCGATAGTGAAGATTACAGTTTATACAGAGCTAAGCCATTCACCTTAAAGA CTTGCTCTTCAGTTCAATGTATCCAAGAAAACATTTTAGCTTATGGTCCAATCGTTGGTA CTATGGAAGTTTATGAAGATTTTATGAGCTACAGCTCAGGTGTTTACGTTATGACTCCAG GTTCATCTTATTAGGTGGTCATGCTATTAAAATTGTTGGTTGGGGCTTTGATCAAACCTC TCAATTAAACTACTGGATTGTTGCTAATTCATGGGGTGCTGACTGGGGTCAACAAGGTTT CTTTTTCATTTCAATGGAAACTTGTTCAATTTCTAGTGATGCAAGTGCTGCCGAAGCCCG TGTTTAAATTGTTTCAAATAAAATTTCATTTACACATTAATAATTTT
Length of full length seq.	1007

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas