>SFC177 (SFC177Q) /CSM/SF/SFC1-D/SFC177Q.Seq.d/
XXXXXXXXXXGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATG
TCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTC
AAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTC
ATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTT
TTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAG
ATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGC
AAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTA
GACATGGTTTCAGTCATGATA

---VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVH
QACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQ
IASYTLPNLPDIVVQRVLIRHGFSHD

Frame A:
---VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVH
QACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQ
IASYTLPNLPDIVVQRVLIRHGFSHD


Frame B:
---sygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfi
klv*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgk
lhpilyqtyqil*fkey*ldmvsvmi


Frame C:
---rmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsss
slsrswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlan
cilystkltrycssksin*twfqs*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF805 (SSF805Q) /CSM/SS/SSF8-A/SSF805Q.Seq.d/                        854   0.0
SSF452 (SSF452Q) /CSM/SS/SSF4-C/SSF452Q.Seq.d/                        854   0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/                        854   0.0
SLI443 (SLI443Q) /CSM/SL/SLI4-B/SLI443Q.Seq.d/                        854   0.0
SLH288 (SLH288Q) /CSM/SL/SLH2-D/SLH288Q.Seq.d/                        854   0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                        854   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                        854   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                        854   0.0
SFJ796 (SFJ796Q) /CSM/SF/SFJ7-D/SFJ796Q.Seq.d/                        854   0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/                        854   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC040895|AC040895.2 Homo sapiens chromosome 11 clone RP11-40P7 map 11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   0.40   1
AC093011|AC093011.3 Homo sapiens X BAC RP11-40P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   0.40   1
AC125649|AC125649.4 Rattus norvegicus clone CH230-309G16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.40   1
AC131823|AC131823.3 Rattus norvegicus clone CH230-131F9, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46   0.40   1
AC006704|AC006704.1 Caenorhabditis elegans clone Y108G3a, WORKING DRAFT SEQUENCE, 28 unordered pieces.    38   1.1    9
AL135914|AL135914.25 Human DNA sequence from clone RP1-56L9 on chromosome 6.    44   1.6    1
AC119617|AC119617.6 Rattus norvegicus clone CH230-11P7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   1.6    6
AC094966|AC094966.5 Rattus norvegicus clone CH230-6L24, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    34   1.7    4
AL109921|AL109921.21 Human DNA sequence from clone RP3-383J4 on chromosome 1q24.1-24.3  Contains part of a gene encoding a kelch motif containing protein,  part of a novel gene encoding a protein similar to Aspartyl-TRNA  synthetase, a putative novel gene, a 40S ribosomal protein S27  (RPS27) pseudogene, 2 CpG islands, ESTs, STSs and GSSs.    40   1.8    3
AC135335|AC135335.3 Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence.    38   2.3    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   200   1e-50
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   198   5e-50
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   194   8e-49
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   192   3e-48
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   189   2e-47
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   187   1e-46
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   177   1e-43
AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ...   172   2e-42
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   172   4e-42
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   172   4e-42

 psg: 0.63  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SFC177 is cyt

>SFC177Z.Seq
----------GGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATG
TCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTC
AAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTC
ATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTT
TTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAG
ATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGC
AAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTA
GACATGGTTTCAGTCATGATA