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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC168
Library SF
(Link to library)
Clone ID SFC168
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09012-1
Original site URL
Representative seq. ID SFC168P
(Link to Original site)
Representative DNA sequence 
>SFC168 (SFC168Q) /CSM/SF/SFC1-C/SFC168Q.Seq.d/
ANACACTGTTGGCCTACTGGGTTGCAACACCTGGTAGATTATTAGATCATTTACAAAATA
CTCAATCATTTCCAACTGATAATATTAAATGGTGTATTTTGGATGAAGCTGATAAATTAT
TGGATTTAGGTTTTGAAAAGGATGTTACCACTATCATTAATTTATTAGATTCAAAAAAAG
AGAACAATGAAATTCAAAAGACAAAATATTTTAGTTTCTGCTACTCTTAGTGAAGGTATT
TCAAGATTGGCTTCATTATCATTAACAAGTCCAGTTTACATTGGTTTGGATTCAAAAGTA
TTAGAAAAAGGTGAAAATCCATTCCAAGCTGCTGAAAAAGAAATGCTTCAAGCTCCAAAA
CAATTGGATCAATTTTATGTTGAAGTTGAATCAAAAGAACGTCTAACTTCTTTAATAGCC
TTTATTAGATGGAAAACTTCAAATATTACAATTGATAAAGGCGATGTNGCCTCTGGTAAT
AGNTXXXXXXXXXXTTCATAGAATTGGTAGAACTGCTCGTTTAGGTAATCAAGGTTGTTC
ATTATTATTCCTTTTACCAAGTGAAAAGAAGTATATTGATCATTTGGCTAAATTTAATGT
CTCTGTTAAAGAAATGAAAGTTACAACTATTCTTCAAAGTTTATTCTACACAAGTGATGG
TCAATTGAAAAAAACTTCAAAATCTTCACAATTGGAATCACAAGTACACGATTTACAATT
ACTATTTGAAAGATTTTTAATTTATGATTCAAAAGCAAAGGAAATGGCAAGATGTGCTTA
TCAATCTTTCCTTAGATCTTATGCAACTCATAAAGCTGATGTTAAATCAATATTTCATAT
ATCTTATTTACATTTAGGTCATGTTTCAAAGAGTTTTGCACTAAGAGAAACTCCAACAGA
ATTAAATAAAATGTCTGCTGGTATTAAAGGTGCTAAAGCGGCTAAAAAAGGTGATGAAGA
TACACTCCAAAAACAAACTGCTGATTTTAAAATGAAAAATTATAAATCTGTAAATGAATT
CTCTGATGGTTTAAATGATCAACCTTTACAAAGAGCAAATTTCCATTATGAATCTGCTAG
TGGTGTCATTCACAATATCTATCAACGTCATTTCAATAGAAACGAAAGAGATGAAGCTGA
TAAAAACTCAAATCCAAAAGAAATCAAAGAAAAGAAAAGAAGATTATATGATAAAAAAAT
NAATCAAATAAAAAATTTAAATCAAAATAAATANNCTTTTAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
xhcwptglqhlvdy*iiykilnhfqliilngvfwmklinywi*vlkrmlplsliy*IQKK
RTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAPK
QLDQFYVEVESKERLTSLIAFIRWKTSNITIDKGDVASGNX---

---HRIGRTARLGNQGCSLLFLLPSEKKYIDHLAKFNVSVKEMKVTTILQSLFYTSDGQL
KKTSKSSQLESQVHDLQLLFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISY
LHLGHVSKSFALRETPTELNKMSAGIKGAKAAKKGDEDTLQKQTADFKMKNYKSVNEFSD
GLNDQPLQRANFHYESASGVIHNIYQRHFNRNERDEADKNSNPKEIKEKKRRLYDKKXNQ
IKNLNQNKXXFKK
Translated Amino Acid sequence (All Frames) 
Frame A:
xhcwptglqhlvdy*iiykilnhfqliilngvfwmklinywi*vlkrmlplsliy*IQKK
RTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVLEKGENPFQAAEKEMLQAPK
QLDQFYVEVESKERLTSLIAFIRWKTSNITIDKGDVASGNX---

---fielvellv*vikvvhyysfyqvkrsiliiwlnlmsllkk*klqlffkvystqvmvn
*kklqnlhnwnhkytiynyylkdf*fmiqkqrkwqdvlinlsldlmqliklmlnqyfiyl
iyi*vmfqrvlh*eklqqn*ikcllvlkvlkrlkkvmkihsknkllilk*kiinl*mnsl
mv*minlykeqisimnllvvsftisinvisietkemkliktqiqkkskkrkedymikkxi
k*ki*ikinxllkk

Frame B:
xtvgllgcntw*iirsftkysiisn**y*mvyfg*s**iigfrf*kgcyhyh*firfkkr
eq*nskdkif*fllllvkvfqdwlhyh*qvqftlvwiqky*kkvkihskllkkkcfklqn
nwinfmlklnqknv*ll**plldgklqilqlikamxplvix---

---s*nw*ncsfr*srlfiiipftk*kevy*sfg*i*clc*rnesynysskfilhk*wsi
eknfkiftigitstrftiti*kifnl*fkskgngkmclsifp*ilcns*s*c*inisyil
ftfrscfkefctkrnsnrik*nvcwy*rc*sg*kr**rytpktnc*f*nekl*ick*il*
wfk*stftkskfpl*ic*wchsqylstsfq*krkr*s**klkskrnqrkekkii**knxs
nkkfksk*ixf*k

Frame C:
tllaywvatpgrlldhlqntqsfptdnikwcildeadklldlgfekdvttiinlldskke
nneiqktkyfsfcys**ryfkigfiiinksslhwfgfksirkr*ksipsc*krnassskt
igsilc*s*ikrtsnffnsly*menfkyyn**rrcxlw**---

---HRIGRTARLGNQGCSLLFLLPSEKKYIDHLAKFNVSVKEMKVTTILQSLFYTSDGQL
KKTSKSSQLESQVHDLQLLFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISY
LHLGHVSKSFALRETPTELNKMSAGIKGAKAAKKGDEDTLQKQTADFKMKNYKSVNEFSD
GLNDQPLQRANFHYESASGVIHNIYQRHFNRNERDEADKNSNPKEIKEKKRRLYDKKXNQ
IKNLNQNKXXFKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC168 (SFC168Q) /CSM/SF/SFC1-C/SFC168Q.Seq.d/                       2068   0.0
SLE274 (SLE274Q) /CSM/SL/SLE2-D/SLE274Q.Seq.d/                         46   0.001
CHP228 (CHP228Q) /CSM/CH/CHP2-B/CHP228Q.Seq.d/                         44   0.005
VFM747 (VFM747Q) /CSM/VF/VFM7-B/VFM747Q.Seq.d/                         42   0.020
VFB308 (VFB308Q) /CSM/VF/VFB3-A/VFB308Q.Seq.d/                         42   0.020
SFC375 (SFC375Q) /CSM/SF/SFC3-D/SFC375Q.Seq.d/                         42   0.020
AFJ281 (AFJ281Q) /CSM/AF/AFJ2-D/AFJ281Q.Seq.d/                         42   0.020
VFM586 (VFM586Q) /CSM/VF/VFM5-D/VFM586Q.Seq.d/                         40   0.080
VFM329 (VFM329Q) /CSM/VF/VFM3-B/VFM329Q.Seq.d/                         40   0.080
VFM209 (VFM209Q) /CSM/VF/VFM2-A/VFM209Q.Seq.d/                         40   0.080
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   890   0.0    2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40   2e-07  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   3e-07  21
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   7e-06  17
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   2e-05  9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36   2e-05  19
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42   4e-05  12
AI895038|AI895038.1 EST264481 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC6J13, mRNA sequence.    58   3e-04  1
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           44   3e-04  28
AC068552|AC068552.6 Homo sapiens clone RP11-743I4, complete sequence.    36   0.001  9
dna update 2003.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869P0) RecName: Full=Probable ATP-dependent RNA helicase ddx31...   437   e-121
BX276128_8(BX276128|pid:none) Zebrafish DNA sequence from clone ...   114   9e-24
BC084638_1(BC084638|pid:none) Xenopus laevis hypothetical LOC495...   111   5e-23
AK166327_1(AK166327|pid:none) Mus musculus mammary gland RCB-052...   108   5e-22
BC149182_1(BC149182|pid:none) Bos taurus DEAD (Asp-Glu-Ala-Asp) ...   106   2e-21
(Q7XJN0) RecName: Full=DEAD-box ATP-dependent RNA helicase 17;  ...   103   9e-21
AJ010468_1(AJ010468|pid:none) Arabidopsis thaliana mRNA for DEAD...   103   9e-21
AK023695_1(AK023695|pid:none) Homo sapiens cDNA FLJ13633 fis, cl...   102   2e-20
AK027002_1(AK027002|pid:none) Homo sapiens cDNA: FLJ23349 fis, c...   102   2e-20
(Q96SX5) RecName: Full=Probable ATP-dependent RNA helicase DDX31...   102   2e-20
protein update 2009. 5.22
PSORT 

 psg: 0.91  gvh: 0.53  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.44  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SFC168 is mit
5' end seq. ID SFC168F
5' end seq. 
>SFC168F.Seq
ANACACTGTTGGCCTACTGGGTTGCAACACCTGGTAGATTATTAGATCATTTACAAAATA
CTCAATCATTTCCAACTGATAATATTAAATGGTGTATTTTGGATGAAGCTGATAAATTAT
TGGATTTAGGTTTTGAAAAGGATGTTACCACTATCATTAATTTATTAGATTCAAAAAAAG
AGAACAATGAAATTCAAAAGACAAAATATTTTAGTTTCTGCTACTCTTAGTGAAGGTATT
TCAAGATTGGCTTCATTATCATTAACAAGTCCAGTTTACATTGGTTTGGATTCAAAAGTA
TTAGAAAAAGGTGAAAATCCATTCCAAGCTGCTGAAAAAGAAATGCTTCAAGCTCCAAAA
CAATTGGATCAATTTTATGTTGAAGTTGAATCAAAAGAACGTCTAACTTCTTTAATAGCC
TTTATTAGATGGAAAACTTCAAATATTACAATTGATAAAGGCGATGTNGCCTCTGGTAAT
AGNT----------
Length of 5' end seq. 484
3' end seq. ID SFC168Z
3' end seq. 
>SFC168Z.Seq
----------TTCATAGAATTGGTAGAACTGCTCGTTTAGGTAATCAAGGTTGTTCATTA
TTATTCCTTTTACCAAGTGAAAAGAAGTATATTGATCATTTGGCTAAATTTAATGTCTCT
GTTAAAGAAATGAAAGTTACAACTATTCTTCAAAGTTTATTCTACACAAGTGATGGTCAA
TTGAAAAAAACTTCAAAATCTTCACAATTGGAATCACAAGTACACGATTTACAATTACTA
TTTGAAAGATTTTTAATTTATGATTCAAAAGCAAAGGAAATGGCAAGATGTGCTTATCAA
TCTTTCCTTAGATCTTATGCAACTCATAAAGCTGATGTTAAATCAATATTTCATATATCT
TATTTACATTTAGGTCATGTTTCAAAGAGTTTTGCACTAAGAGAAACTCCAACAGAATTA
AATAAAATGTCTGCTGGTATTAAAGGTGCTAAAGCGGCTAAAAAAGGTGATGAAGATACA
CTCCAAAAACAAACTGCTGATTTTAAAATGAAAAATTATAAATCTGTAAATGAATTCTCT
GATGGTTTAAATGATCAACCTTTACAAAGAGCAAATTTCCATTATGAATCTGCTAGTGGT
GTCATTCACAATATCTATCAACGTCATTTCAATAGAAACGAAAGAGATGAAGCTGATAAA
AACTCAAATCCAAAAGAAATCAAAGAAAAGAAAAGAAGATTATATGATAAAAAAATNAAT
CAAATAAAAAATTTAAATCAAAATAAATANNCTTTTAAAAAAA
Length of 3' end seq. 753
Connected seq. ID SFC168P
Connected seq. 
>SFC168P.Seq
ANACACTGTTGGCCTACTGGGTTGCAACACCTGGTAGATTATTAGATCATTTACAAAATA
CTCAATCATTTCCAACTGATAATATTAAATGGTGTATTTTGGATGAAGCTGATAAATTAT
TGGATTTAGGTTTTGAAAAGGATGTTACCACTATCATTAATTTATTAGATTCAAAAAAAG
AGAACAATGAAATTCAAAAGACAAAATATTTTAGTTTCTGCTACTCTTAGTGAAGGTATT
TCAAGATTGGCTTCATTATCATTAACAAGTCCAGTTTACATTGGTTTGGATTCAAAAGTA
TTAGAAAAAGGTGAAAATCCATTCCAAGCTGCTGAAAAAGAAATGCTTCAAGCTCCAAAA
CAATTGGATCAATTTTATGTTGAAGTTGAATCAAAAGAACGTCTAACTTCTTTAATAGCC
TTTATTAGATGGAAAACTTCAAATATTACAATTGATAAAGGCGATGTNGCCTCTGGTAAT
AGNT----------TTCATAGAATTGGTAGAACTGCTCGTTTAGGTAATCAAGGTTGTTC
ATTATTATTCCTTTTACCAAGTGAAAAGAAGTATATTGATCATTTGGCTAAATTTAATGT
CTCTGTTAAAGAAATGAAAGTTACAACTATTCTTCAAAGTTTATTCTACACAAGTGATGG
TCAATTGAAAAAAACTTCAAAATCTTCACAATTGGAATCACAAGTACACGATTTACAATT
ACTATTTGAAAGATTTTTAATTTATGATTCAAAAGCAAAGGAAATGGCAAGATGTGCTTA
TCAATCTTTCCTTAGATCTTATGCAACTCATAAAGCTGATGTTAAATCAATATTTCATAT
ATCTTATTTACATTTAGGTCATGTTTCAAAGAGTTTTGCACTAAGAGAAACTCCAACAGA
ATTAAATAAAATGTCTGCTGGTATTAAAGGTGCTAAAGCGGCTAAAAAAGGTGATGAAGA
TACACTCCAAAAACAAACTGCTGATTTTAAAATGAAAAATTATAAATCTGTAAATGAATT
CTCTGATGGTTTAAATGATCAACCTTTACAAAGAGCAAATTTCCATTATGAATCTGCTAG
TGGTGTCATTCACAATATCTATCAACGTCATTTCAATAGAAACGAAAGAGATGAAGCTGA
TAAAAACTCAAATCCAAAAGAAATCAAAGAAAAGAAAAGAAGATTATATGATAAAAAAAT
NAATCAAATAAAAAATTTAAATCAAAATAAATANNCTTTTAAAAAAA
Length of connected seq. 1237
Full length Seq ID -
Full length Seq. -
Length of full length seq. -