SFC149
Library SF
(Link to library)
Clone ID SFC149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SFC149Z
(Link to Original site)
Representative DNA sequence
>SFC149 (SFC149Q) /CSM/SF/SFC1-C/SFC149Q.Seq.d/
XXXXXXXXXXAGATTCCCATGTTGCCCATCTCATCCAAATTTGTATTCATCCATCAACTA
CTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAAACTACAACCTCTGCAACT
ACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCT
GCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGT
GCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCA
AGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCANCAGCTTCAAGTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---IPMLPISSKFVFIHQLLLLQPLQQLHQLSQTTTSATTAGTTTGGTTTGGSTSDSSAA
SSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSXASS


Translated Amino Acid sequence (All Frames)
Frame A:
---dshvahliqicihpsttaastiattastvanynlcnycrynnwwnynwwfnf***cc
flsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiixsfkf


Frame B:
---IPMLPISSKFVFIHQLLLLQPLQQLHQLSQTTTSATTAGTTTGGTTTGGSTSDSSAA
SSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSXASS


Frame C:
---fpccpshpnlyssinyccfnhcnncincrklqplqllqvqqlvelqlvvqllivvll
pqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqvvlhhxqlqv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFC149 (SFC149Q) /CSM/SF/SFC1-C/SFC149Q.Seq.d/ 680 0.0
CFF503 (CFF503Q) /CSM/CF/CFF5-A/CFF503Q.Seq.d/ 656 0.0
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/ 648 0.0
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/ 648 0.0
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/ 648 0.0
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/ 648 0.0
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/ 648 0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/ 648 0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/ 648 0.0
SSB232 (SSB232Q) /CSM/SS/SSB2-B/SSB232Q.Seq.d/ 648 0.0

own update 2002. 7. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds. 500 0.0 3
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read. 42 3e-04 2
CF609077|CF609077.1 GERMO01_000801 Grape Shoot pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 34 0.19 2
AC027658|AC027658.1 Oryza sativa subsp. japonica BAC nbxb0006I13, chromosome 10, complete sequence. 44 1.3 1
BU027396|BU027396.1 QHG5F22.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG5F22, mRNA sequence. 44 1.3 1
AE017095|AE017095.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 49 of 77 of the complete sequence. 44 1.3 1
CF324744|CF324744.1 JMT1--01-F20.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza sativa cDNA clone JMT1--01-F20, mRNA sequence. 44 1.3 1
CB670885|CB670885.1 OSJNEe04D05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe04D05 3', mRNA sequence. 44 1.3 1
AU068578|AU068578.1 Oryza sativa cDNA, partial sequence (C30478_11Z). 44 1.3 1
CB628070|CB628070.1 ---. 44 1.3 1
dna update 2003.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992... 33 3.0

protein update 2009. 1. 6
PSORT

psg: 0.87 gvh: 0.62 alm: 0.36 top: 0.57 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: vacuolar

>> prediction for SFC149 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFC149Z
3' end seq.
>SFC149Z.Seq
----------AGATTCCCATGTTGCCCATCTCATCCAAATTTGTATTCATCCATCAACTA
CTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAAACTACAACCTCTGCAACT
ACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCT
GCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGT
GCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCA
AGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCANCAGCTTCAAGTTC
Length of 3' end seq. 346
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -