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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC145
Library SF
(Link to library)
Clone ID SFC145
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16526-1
Original site URL
Representative seq. ID SFC145P
(Link to Original site)
Representative DNA sequence 
>SFC145 (SFC145Q) /CSM/SF/SFC1-B/SFC145Q.Seq.d/
CACTGTTGGCCTACTGGATTACAATAATTGGTTATGTAACTTCAAATGATGGTATCACTG
CAAGTAAATCATGTAAAATTCAAGTAAAAGAAGCAAGCAACATTGAGGAAGCAATCAACT
TTTTAAGTACAACTATAACCAATCCAGATGTTTCACTTTATCAACTTAGTGTAGCATTGA
AAATTGCCAATTCATTGGTTCCTGAAACTTTGAGATTAGCCAAGGCATCATCAAAGAATG
TTGTTTCAGAAACTGATGAACAATTCCAAGTTATAATGCCAGAAACTCCACAATCTGCAA
ATAAAGTTGTATTTTCAAAGAAACCAACCAATCCATACCTTGAACAACAAGAAGAAACAA
AACAATTTGATCAACCAACAGTAAATAAGAAGATGTCAGCAGCTGCAGTTGCCACTCAAA
TATCTCAATTTAAAGCCAATGGTATTCGTCAAGTAATGGACCAGGTTGTTAAACAAAAAA
AACAACTCTCAAACTATGGTATTTCAACAGTTGTCGATTTGATATCAACCTCTACAGATA
CTTCAGCAGTTGTTCATCCATCAACCTCTTAAAGAATCAATGAATATTATGAAAGTAGTT
AGTCCAATGATGGTTAXXXXXXXXXXGAAAAAGAAGCCAAAAAGAACCAAGCAAAAGAAA
AGAAAGAAGCTGATAAATTGGAAAAAGAAAATAAAAAGAAAGAAAAAAAAGACTCCAAAA
AACAACAAAATGATAATGCTGAAGCCTCAGGATCTGGTGATCTTCCAATACCAAAGAATA
AAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATTCTTCAAGAGTTTAAAG
ATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTGAAAAATCATCAACCAA
TTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCAACTCCAATAACTTCTA
CAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAATAATGATAACAGTAATA
CAACAACTACTACAACAACTACAACTACTACAACAATAAATGATAGAGATAAAGCAGCCA
AGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAACTTAAAAAAGAAGCTG
AAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGATAATGAAAGAGATCCAT
TTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAAGATAATGATCAACCAC
AAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAATGAAGATATTGAAAATA
AAGAGAAGATGTNAAAATAAAGAGAAGATGTNAAAATAAAGANAAGANAAGAAGATCAAA
TCGAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptglq*lvm*lqmmvslqvnhvkfk*kkqatlrkqstf*vql*piqmfhfinlv*h*
klpihwflkl*d*prhhqrmlfqklmnnskl*cqklhnlqiklyfqrnqpihtlnnkkkq
nnlinqq*irrcqqlqlplkylnlkpmvfvk*wtrllnkknnsqtmvfqqlsi*YQPLQI
LQQLFIHQPLKESMNIMKVVSPMMV---

---EKEAKKNQAKEKKEADKLEKENKKKEKKDSKKQQNDNAEASGSGDLPIPKNKKDKSF
GDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNVSSTTSTPITSTIQPVI
DESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNYCSIKQLKKEAEVEELL
ENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNEQIESNEDIENKEKMXK
*redvkikxrxedqie
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptglq*lvm*lqmmvslqvnhvkfk*kkqatlrkqstf*vql*piqmfhfinlv*h*
klpihwflkl*d*prhhqrmlfqklmnnskl*cqklhnlqiklyfqrnqpihtlnnkkkq
nnlinqq*irrcqqlqlplkylnlkpmvfvk*wtrllnkknnsqtmvfqqlsi*YQPLQI
LQQLFIHQPLKESMNIMKVVSPMMV---

---EKEAKKNQAKEKKEADKLEKENKKKEKKDSKKQQNDNAEASGSGDLPIPKNKKDKSF
GDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNVSSTTSTPITSTIQPVI
DESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNYCSIKQLKKEAEVEELL
ENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNEQIESNEDIENKEKMXK
*redvkikxrxedqie

Frame B:
tvglldynnwlcnfk*wyhck*im*nsskrskqh*gsnqlfkynynqsrcftlst*csie
ncqfigs*nfeisqgiikeccfrn**tipsynarnstick*scifketnqsip*ttrrnk
ti*stnsk*edvsscschsnisi*sqwysssngpgc*tkkttlklwyfnscrfdinlyry
fsscssinllknq*il*k*lvq*wl---

---kkkpkrtkqkkrkklinwkkkikrkkkktpknnkmimlkpqdlvifqyqrikkinpl
vmkmmfniffkslkisllklkrennlns*kiinqfhl*lqlvmyqvqlqlq*llqfnqll
mnlqvviiimitviqqllqqlqllqq*mieikqprqfkrhgkiivvsnnlkkklklknyl
kilvncylimkeihlkiikh*ilksmmmkiminhktitimnqtnklnqmkilkikrrcxn
kekmxk*rxxkkiksk

Frame C:
llaywitiigyvtsndgitasksckiqvkeasnieeainflsttitnpdvslyqlsvalk
ianslvpetlrlakassknvvsetdeqfqvimpetpqsankvvfskkptnpyleqqeetk
qfdqptvnkkmsaaavatqisqfkangirqvmdqvvkqkkqlsnygistvvdliststdt
savvhpsts*rineyyess*sndg---

---krsqkepskrkers**igkrk*kerkkrlqkttk**c*slriw*ssntke*kr*ilw
**k*csiyssrv*rylc*s*kertt*tleksstnftcnfnw*cikynfnsnnfynstsy*
*ifk*******q*ynnyynnynyynnk**r*ssqdnskgmekll*yqtt*krs*s*rit*
kyw*ivi***krsi*klsnirysnr***r**sttrr*q**ikrtn*ik*ry*k*redvki
krrcxnkxkxrrsnrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC145 (SFC145Q) /CSM/SF/SFC1-B/SFC145Q.Seq.d/                       1174   0.0
CHE768 (CHE768Q) /CSM/CH/CHE7-C/CHE768Q.Seq.d/                       1124   0.0
CHH130 (CHH130Q) /CSM/CH/CHH1-B/CHH130Q.Seq.d/                        985   0.0
SLA580 (SLA580Q) /CSM/SL/SLA5-D/SLA580Q.Seq.d/                        928   0.0
CHS334 (CHS334Q) /CSM/CH/CHS3-B/CHS334Q.Seq.d/                        918   0.0
CFI137 (CFI137Q) /CSM/CF/CFI1-B/CFI137Q.Seq.d/                        884   0.0
CHK332 (CHK332Q) /CSM/CH/CHK3-B/CHK332Q.Seq.d/                        833   0.0
CHM513 (CHM513Q) /CSM/CH/CHM5-A/CHM513Q.Seq.d/                        819   0.0
SLI378 (SLI378Q) /CSM/SL/SLI3-D/SLI378Q.Seq.d/                        676   0.0
CFE837 (CFE837Q) /CSM/CF/CFE8-B/CFE837Q.Seq.d/                        638   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U82511|U82511.1 Dictyostelium discoideum random slug cDNA19 protein (rsc19) mRNA, partial cds.   494   0.0    3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38   7e-06  9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   2e-05  7
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           46   4e-05  8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38   8e-05  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            42   9e-05  9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-04  10
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    38   1e-04  5
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    40   1e-04  11
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  38   2e-04  15
dna update 2003.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000568_1256(CP000568|pid:none) Clostridium thermocellum ATCC 2...    37   1.2
AE015450_562(AE015450|pid:none) Mycoplasma gallisepticum strain ...    35   4.7
BC159224_1(BC159224|pid:none) Danio rerio zgc:174862, mRNA (cDNA...    35   6.2
CU459141_1182(CU459141|pid:none) Acinetobacter baumannii str. AY...    35   8.1
protein update 2009. 1. 6
PSORT 

 psg: 0.80  gvh: 0.19  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SFC145 is nuc
5' end seq. ID SFC145F
5' end seq. 
>SFC145F.Seq
CACTGTTGGCCTACTGGATTACAATAATTGGTTATGTAACTTCAAATGATGGTATCACTG
CAAGTAAATCATGTAAAATTCAAGTAAAAGAAGCAAGCAACATTGAGGAAGCAATCAACT
TTTTAAGTACAACTATAACCAATCCAGATGTTTCACTTTATCAACTTAGTGTAGCATTGA
AAATTGCCAATTCATTGGTTCCTGAAACTTTGAGATTAGCCAAGGCATCATCAAAGAATG
TTGTTTCAGAAACTGATGAACAATTCCAAGTTATAATGCCAGAAACTCCACAATCTGCAA
ATAAAGTTGTATTTTCAAAGAAACCAACCAATCCATACCTTGAACAACAAGAAGAAACAA
AACAATTTGATCAACCAACAGTAAATAAGAAGATGTCAGCAGCTGCAGTTGCCACTCAAA
TATCTCAATTTAAAGCCAATGGTATTCGTCAAGTAATGGACCAGGTTGTTAAACAAAAAA
AACAACTCTCAAACTATGGTATTTCAACAGTTGTCGATTTGATATCAACCTCTACAGATA
CTTCAGCAGTTGTTCATCCATCAACCTCTTAAAGAATCAATGAATATTATGAAAGTAGTT
AGTCCAATGATGGTTA----------
Length of 5' end seq. 616
3' end seq. ID SFC145Z
3' end seq. 
>SFC145Z.Seq
----------GAAAAAGAAGCCAAAAAGAACCAAGCAAAAGAAAAGAAAGAAGCTGATAA
ATTGGAAAAAGAAAATAAAAAGAAAGAAAAAAAAGACTCCAAAAAACAACAAAATGATAA
TGCTGAAGCCTCAGGATCTGGTGATCTTCCAATACCAAAGAATAAAAAAGATAAATCCTT
TGGTGATGAAAATGATGTTCAATATATTCTTCAAGAGTTTAAAGATATCTTTGCTGAAGC
TAAAAAGAGAGAACAACTTAAACTCTTGAAAAATCATCAACCAATTTCACCTGTAACTTC
AATTGGTAATGTATCAAGTACAACTTCAACTCCAATAACTTCTACAATTCAACCAGTTAT
TGATGAATCTTCAAGTAGTAATAATAATAATGATAACAGTAATACAACAACTACTACAAC
AACTACAACTACTACAACAATAAATGATAGAGATAAAGCAGCCAAGACAATTCAAAAGGC
ATGGAAAAATTATTGTAGTATCAAACAACTTAAAAAAGAAGCTGAAGTTGAAGAATTACT
TGAAAATATTGGTGAATTGTTATCTGATAATGAAAGAGATCCATTTGAAAATTATCAAAC
ATTAGATACTCAAATCGATGATGATGAAGATAATGATCAACCACAAGACGATAACAATAA
TGAATCAAACGAACAAATTGAATCAAATGAAGATATTGAAAATAAAGAGAAGATGTNAAA
ATAAAGAGAAGATGTNAAAATAAAGANAAGANAAGAAGATCAAATCGAAAA
Length of 3' end seq. 761
Connected seq. ID SFC145P
Connected seq. 
>SFC145P.Seq
CACTGTTGGCCTACTGGATTACAATAATTGGTTATGTAACTTCAAATGATGGTATCACTG
CAAGTAAATCATGTAAAATTCAAGTAAAAGAAGCAAGCAACATTGAGGAAGCAATCAACT
TTTTAAGTACAACTATAACCAATCCAGATGTTTCACTTTATCAACTTAGTGTAGCATTGA
AAATTGCCAATTCATTGGTTCCTGAAACTTTGAGATTAGCCAAGGCATCATCAAAGAATG
TTGTTTCAGAAACTGATGAACAATTCCAAGTTATAATGCCAGAAACTCCACAATCTGCAA
ATAAAGTTGTATTTTCAAAGAAACCAACCAATCCATACCTTGAACAACAAGAAGAAACAA
AACAATTTGATCAACCAACAGTAAATAAGAAGATGTCAGCAGCTGCAGTTGCCACTCAAA
TATCTCAATTTAAAGCCAATGGTATTCGTCAAGTAATGGACCAGGTTGTTAAACAAAAAA
AACAACTCTCAAACTATGGTATTTCAACAGTTGTCGATTTGATATCAACCTCTACAGATA
CTTCAGCAGTTGTTCATCCATCAACCTCTTAAAGAATCAATGAATATTATGAAAGTAGTT
AGTCCAATGATGGTTA----------GAAAAAGAAGCCAAAAAGAACCAAGCAAAAGAAA
AGAAAGAAGCTGATAAATTGGAAAAAGAAAATAAAAAGAAAGAAAAAAAAGACTCCAAAA
AACAACAAAATGATAATGCTGAAGCCTCAGGATCTGGTGATCTTCCAATACCAAAGAATA
AAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATTCTTCAAGAGTTTAAAG
ATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTGAAAAATCATCAACCAA
TTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCAACTCCAATAACTTCTA
CAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAATAATGATAACAGTAATA
CAACAACTACTACAACAACTACAACTACTACAACAATAAATGATAGAGATAAAGCAGCCA
AGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAACTTAAAAAAGAAGCTG
AAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGATAATGAAAGAGATCCAT
TTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAAGATAATGATCAACCAC
AAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAATGAAGATATTGAAAATA
AAGAGAAGATGTNAAAATAAAGAGAAGATGTNAAAATAAAGANAAGANAAGAAGATCAAA
TCGAAAA
Length of connected seq. 1377
Full length Seq ID -
Full length Seq. -
Length of full length seq. -