SFC139 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFC139
Library	SF (Link to library)
Clone ID	SFC139 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16419-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFC1-B/SFC139Q.Seq.d/
Representative seq. ID	SFC139P (Link to Original site)
Representative DNA sequence	>SFC139 (SFC139Q) /CSM/SF/SFC1-B/SFC139Q.Seq.d/ TTGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT GGTACATCAGGTAGTTCATCAAGTGGTAGTTCATCAGGTGGTGTAAGTTCATGTTCAACT ACACATTGTXXXXXXXXXXAANATGNCCNCCAAATTCATGAATGTAGATTTNAATGACCA AAGGTCATCAATGCTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCACAT GNCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCA CCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAAACATGAATGTAAATTTGATGA TCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGG TAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAG ACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAA AGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTC TTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGT TAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGA TCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAG ATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAG TAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGC CATGAAAACTGTACCACTTGATAAAGAAAATTGTTGTGAAAAAGTTCCAGTATGTTATTC CACNAATCCATTAT
sequence update	2001. 6. 1
Translated Amino Acid sequence	LIFLVSKSYATDCNKITNEEECHKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYR NSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCC PGESICEGLSSGSSTSGGGSSGGTSGGSSSGGTSGGSSSGGTSGSSSSGSSSGGVSSCST THC--- ---XMXXKFMNVDXNDQRSSMLCKGFTMIDVHdvhmxmnvklitmvknvasdpidhhhq kfvhdahqkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrserphp pqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccvkvh hdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccvksrnd cltcedlncerkglhcamktvpldkenccekvpvcystnpl
Translated Amino Acid sequence (All Frames)	Frame A: LIFLVSKSYATDCNKITNEEECHKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYR NSSNNQVVEVSNKCFNLDGFIKITTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCC PGESICEGLSSGSSTSGGGSSGGTSGGSSSGGTSGGSSSGGTSGSSSSGSSSGGVSSCST THC--- ---XMXXKFMNVDXNDQRSSMLCKGFTMIDVHdvhmxmnvklitmvknvasdpidhhhq kfvhdahqkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrserphp pqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccvkvh hdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccvksrnd cltcedlncerkglhcamktvpldkenccekvpvcystnpl Frame B: yslyqnpmrrivikllmkknvinlrnvlliihhvvvnknglalkvhlilvhmkivvie ihpitkllkyqinasilmdllklqlqpsilvlmprlknvpyvnhvvskrtlvqiqlpva qvnqfvkvalvvqhlvvvhqvvhqvvvhqvvhqvvvhqvvhqvvhqvvvhqvvvhvql hi--- ---xxppnsmixmtkghqccvkgspmfikmstxpmssqwrmlrqipttttr slfikmptknmnvnlmimvknvvrfivmkfviivvevlnvkldmmvqnvvsvqkdhth hnmknvirdahqamnvklinmeknvallpidhhqnaldvhqdmnvesttlvknvvlkft tinvhdvhqamnvklinmeknvallpidhhqnahdvhqnmnvesitlvknavlkvemi vlvkttvkekvyivpklyhlikkivvkkfqyvipxihy Frame C: dipcikilcdglnyrrmsifgmycyklytmlwtkmgllryiylyikllk fiqpscsikmlqswiynynsnrvflfcqdrmclirimfpkellfksnfllp rinlrfklwfniwwwfirwyirwfirwyirwfirwyirfikwfirwckfmfny tl--- ---xxxqihecrfxpkvinavrvhhdrcslrcphxheckvdhngkeccvrshrppppe vcslrcppktmiswkmlckdsl*slfrlwrfmntwfkmlcpfrkttpt ttkm*emptrpmsstwkrmlrccptttkmlfkmstktmsqplwrmlcssp rmfiemstrpmsstwkrmlrccptttkmlikmstktmnqslwrmlckkl fnlrpklkkrftlchenctt*rkllksssmlfhxsi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFC139 (SFC139Q) /CSM/SF/SFC1-B/SFC139Q.Seq.d/ 1717 0.0 AHF349 (AHF349Q) /CSM/AH/AHF3-C/AHF349Q.Seq.d/ 1530 0.0 SFI482 (SFI482Q) /CSM/SF/SFI4-D/SFI482Q.Seq.d/ 1524 0.0 AFF122 (AFF122Q) /CSM/AF/AFF1-A/AFF122Q.Seq.d/ 1524 0.0 AHF431 (AHF431Q) /CSM/AH/AHF4-B/AHF431Q.Seq.d/ 1518 0.0 CHL853 (CHL853Q) /CSM/CH/CHL8-C/CHL853Q.Seq.d/ 1515 0.0 CHM150 (CHM150Q) /CSM/CH/CHM1-C/CHM150Q.Seq.d/ 1511 0.0 CHF634 (CHF634Q) /CSM/CH/CHF6-B/CHF634Q.Seq.d/ 1511 0.0 CHH465 (CHH465Q) /CSM/CH/CHH4-C/CHH465Q.Seq.d/ 1509 0.0 SFK830 (SFK830Q) /CSM/SF/SFK8-B/SFK830Q.Seq.d/ 1507 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U25144\|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 1251 0.0 10 AC117267\|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, * SEQUENCING IN PROGRESS *, in ordered pieces. 1243 0.0 11 AC115610\|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 1243 0.0 11 M26239\|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 66 8e-15 4 X51892\|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 66 2e-14 4 AC115685\|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 66 9e-12 6 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 66 2e-09 13 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 58 3e-04 1 X52105\|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 48 0.033 3 AC124167\|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces. 38 0.10 4
dna update	2003.12.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC117267_7(AC117267\|pid:none) Dictyostelium discoideum chromosom... 502 e-168 (P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 172 7e-44 X52105_1(X52105\|pid:none) Dictyostelium discoideum SP60 gene for... 110 2e-22 (Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 105 3e-21 (Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 88 6e-16 S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 75 4e-12 (P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 75 4e-12 (P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 72 4e-11 D13973_1(D13973\|pid:none) Dictyostelium discoideum gene for Dp87... 71 8e-11 (Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 70 1e-10
protein update	2009. 5.22
PSORT	psg: 0.57 gvh: 0.49 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 28.0 %: nuclear 24.0 %: mitochondrial 8.0 %: vesicles of secretory system 4.0 %: vacuolar >> prediction for SFC139 is cyt
5' end seq. ID	SFC139F
5' end seq.	>SFC139F.Seq TTGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT GGTACATCAGGTAGTTCATCAAGTGGTAGTTCATCAGGTGGTGTAAGTTCATGTTCAACT ACACATTGT----------
Length of 5' end seq.	549
3' end seq. ID	SFC139Z
3' end seq.	>SFC139Z.Seq ----------AANATGNCCNCCAAATTCATGAATGTAGATTTNAATGACCAAAGGTCATC AATGCTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCACATGNCCATGAA TGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACCACCA GAAGTTTGTTCATTAAGATGCCCACCAAAAACATGAATGTAAATTTGATGATCATGGTAA AAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTT TGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCC ACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCA ACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATG TCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCA CCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGG AAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACC AAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGA TTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAAC TGTACCACTTGATAAAGAAAATTGTTGTGAAAAAGTTCCAGTATGTTATTCCACNAATCC ATTAT
Length of 3' end seq.	835
Connected seq. ID	SFC139P
Connected seq.	>SFC139P.Seq TTGATATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAA GAATGTCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAA AAATGGGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGA AATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTT ATTAAAATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCC TTATTAGGTAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGC CCAGGTGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCA TCAGGTGGTACATCAGGTGGTAGTTCATCAGGTGGTACATCAGGTGGTAGTTCATCAGGT GGTACATCAGGTAGTTCATCAAGTGGTAGTTCATCAGGTGGTGTAAGTTCATGTTCAACT ACACATTGT----------AANATGNCCNCCAAATTCATGAATGTAGATTTNAATGACCA AAGGTCATCAATGCTGTGTAAAGGGTTCACCATGATAGATGTTCATTAAGATGTCCACAT GNCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCA CCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAAACATGAATGTAAATTTGATGA TCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGG TAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAG ACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAA AGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTC TTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGT TAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGA TCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAG ATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAG TAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGC CATGAAAACTGTACCACTTGATAAAGAAAATTGTTGTGAAAAAGTTCCAGTATGTTATTC CACNAATCCATTAT
Length of connected seq.	1384
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas