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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB656
Library SF
(Link to library)
Clone ID SFB656
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SFB656Z
(Link to Original site)
Representative DNA sequence 
>SFB656 (SFB656Q) /CSM/SF/SFB6-C/SFB656Q.Seq.d/
XXXXXXXXXXAAAAGAAACCGGANCTTGATATACCAATTCATGTCGATGCAGCAAGTGGT
GGTTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGT
TAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGT
CGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGG
TGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCA
GTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCT
AGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTA
TGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAA
ATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTA
TACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAG
TCATGATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---RNRXLIYQFMSMQQVVVFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVV
WRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLD
HGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYT
LPNLPDIVVQRVLIRHGFSHD
Translated Amino Acid sequence (All Frames) 
Frame A:
---ketgx*ytnscrcskwwfslhpffnqklfgildyhvlnqlmalvinlvylhwelags
ygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*
imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpi
lyqtyqil*fkey*ldmvsvmi


Frame B:
---kkpxldipihvdaasggfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgr
mer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsr
swyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancily
stkltrycssksin*twfqs*


Frame C:
---RNRXLIYQFMSMQQVVVFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVV
WRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLD
HGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYT
LPNLPDIVVQRVLIRHGFSHD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB656 (SFB656Q) /CSM/SF/SFB6-C/SFB656Q.Seq.d/                       1179   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                       1164   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                       1164   0.0
CFH535 (CFH535Q) /CSM/CF/CFH5-B/CFH535Q.Seq.d/                       1164   0.0
AFO558 (AFO558Q) /CSM/AF/AFO5-C/AFO558Q.Seq.d/                       1156   0.0
SFL435 (SFL435Q) /CSM/SF/SFL4-B/SFL435Q.Seq.d/                       1154   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1154   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1154   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1154   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1154   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    50   9e-11  3
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   2e-07  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    50   2e-07  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    60   5e-06  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    42   2e-05  3
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    42   2e-05  3
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    42   3e-05  3
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    50   4e-05  2
CF517073|CF517073.1 CAP0004_IIIF_E05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0004_IIIF_E05 5', mRNA sequence.    42   4e-05  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    42   4e-05  2
dna update 2003.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   268   2e-73
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   265   2e-72
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   263   3e-71
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   258   6e-71
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   261   7e-71
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   250   2e-68
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   241   1e-65
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   239   2e-65
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   241   1e-64
AY967181_1(AY967181|pid:none) Synthetic construct isolate FTT172...   235   8e-64
protein update 2009. 5.22
PSORT 

 psg: 0.96  gvh: 0.39  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.36  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SFB656 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFB656Z
3' end seq. 
>SFB656Z.Seq
----------AAAAGAAACCGGANCTTGATATACCAATTCATGTCGATGCAGCAAGTGGT
GGTTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGT
TAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGT
CGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGG
TGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCA
GTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCT
AGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTA
TGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAA
ATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTA
TACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAG
TCATGATA
Length of 3' end seq. 598
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -