>SFB611 (SFB611Q) /CSM/SF/SFB6-A/SFB611Q.Seq.d/
AAATTAAAAAAAAAACAATAACTAACTAAGTTAAAAATAAAAAAATAATAAAGGATGTTG
TTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTTGTATCAAAATCCTATGCGACG
GATTGTAATAAAATTACTAATGAAGAANAATGTCATAAATCTTCGGAATGTATTGTTATA
AATTATACACCATGTTGNGGTGAACAAAAATGGGCTTGCTCTAAAGGTACATTTGATACT
TGTACATATGAAAATAGTTGTTATAGAAATTCATCCAATAACCAAGTTGTTGAAGTATCA
AATAAATGCTTCAATCTTGATGGATTTATTAAAATTACAACTCCAACCGAGTATTCTTGT
TCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAATCATGTAGTTTCCAAAANAAC
TCTTGTTCAAATCCAACTTCCTGTTGCCCAGGNGAATCAATTTGTGAAGGTTTAAGCTCT
GGTAGTTCAACAXXXXXXXXXX

klkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXCHKSSECIVI
NYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSC
SDAKIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSS---

Frame A:
klkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXCHKSSECIVI
NYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKITTPTEYSC
SDAKIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSS---


Frame B:
n*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkxnvinlrnvll*
iihhvxvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllklqlqpsilv
lmprlknvpy*vnhvvskxtlvqiqlpvaqxnqfvkv*alvvq---


Frame C:
ikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rxms*ifgmycyk
lytmlx*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*nynsnrvflf
*cqd*rmclir*im*fpkxllfksnfllprxinl*rfklw*fn---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        862   0.0
SHJ685 (SHJ685Q) /CSM/SH/SHJ6-D/SHJ685Q.Seq.d/                        862   0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        862   0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        862   0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        862   0.0
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/                        862   0.0
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/                        862   0.0
SFH201 (SFH201Q) /CSM/SF/SFH2-A/SFH201Q.Seq.d/                        862   0.0
SFH185 (SFH185Q) /CSM/SF/SFH1-D/SFH185Q.Seq.d/                        862   0.0
SFG768 (SFG768Q) /CSM/SF/SFG7-C/SFG768Q.Seq.d/                        862   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   660   0.0    3
AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   660   0.0    4
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   660   0.0    4
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    32   0.071  8
AX348726|AX348726.1 Sequence 184 from Patent WO0202807.            32   0.15   4
AX344319|AX344319.1 Sequence 166 from Patent WO0200926.            32   0.15   4
AX251923|AX251923.1 Sequence 184 from Patent WO0168911.            32   0.15   4
AC138723|AC138723.2 Danio rerio clone CH211-46E11 strain Tue, WORKING DRAFT SEQUENCE, 15 unordered pieces.    36   0.72   4
CB566403|CB566403.1 AGENCOURT_12971596 NIH_MGC_135 Mus musculus cDNA clone IMAGE:30293960 5', mRNA sequence.    40   0.97   2
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  42   1.2    6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   238   7e-62
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   100   2e-20
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        48   1e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    44   0.002
(Q99088) RecName: Full=Low-density lipoprotein receptor 2;      ...    35   0.74
QRXLL2(B40388)LDL receptor 2 precursor - African clawed frog           35   0.74
(Q99087) RecName: Full=Low-density lipoprotein receptor 1;      ...    35   0.96
BC170345_1(BC170345|pid:none) Xenopus laevis low density lipopro...    35   0.96
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    35   0.96
QRXLL1(A40388)LDL receptor 1 precursor - African clawed frog           35   0.96

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.27  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SFB611 is exc

>SFB611F.Seq
AAATTAAAAAAAAAACAATAACTAACTAAGTTAAAAATAAAAAAATAATAAAGGATGTTG
TTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTTGTATCAAAATCCTATGCGACG
GATTGTAATAAAATTACTAATGAAGAANAATGTCATAAATCTTCGGAATGTATTGTTATA
AATTATACACCATGTTGNGGTGAACAAAAATGGGCTTGCTCTAAAGGTACATTTGATACT
TGTACATATGAAAATAGTTGTTATAGAAATTCATCCAATAACCAAGTTGTTGAAGTATCA
AATAAATGCTTCAATCTTGATGGATTTATTAAAATTACAACTCCAACCGAGTATTCTTGT
TCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAATCATGTAGTTTCCAAAANAAC
TCTTGTTCAAATCCAACTTCCTGTTGCCCAGGNGAATCAATTTGTGAAGGTTTAAGCTCT
GGTAGTTCAACA----------