AFA805
Library AF
(Link to library)
Clone ID AFA805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID AFA805P
(Link to Original site)
Representative DNA sequence
>AFA805 (AFA805Q) /CSM/AF/AFA8-A/AFA805Q.Seq.d/
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAAXXXXXXXXXXAAGCAGGTAAA
TTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTC
GATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCA
GCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCC
GCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTG
GTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCC
GTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTT
GAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGAT
ATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACT
GGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGT
GTAATCTCTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISGCYNTMGQTSENVAERFGVTRKDQDEFSV---

---AGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSS
QMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTT
KDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHR
RKGKYGVIS


Translated Amino Acid sequence (All Frames)
Frame A:
iynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*k
rsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftk
gstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgs
nh*wllqhygsnl*kcrrafwchqkrpr*ilck---

---kqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn*nqlskrvvqpplvtl
vk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsnhplwvlvqplqfqpp*nklvsp
lkistflksmkllllkhftvvrfwvwi*tkliqmalvsl*vih*vllvpvkwlpfqenyi
vvkvnmv*sl

Frame B:
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISGCYNTMGQTSENVAERFGVTRKDQDEFSV---

---sr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgqiktsfqrgwynhrw*l*
sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrtihygywssrcnssrlktswshh
*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwyrfrssircywcpsngyhfkrits
s*r*iwcnl

Frame C:
i*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklke
ehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqr
kyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriq
slvvvttlwvkplkmsqsvlvspektkmnsl*---

---AGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSS
QMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTT
KDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHR
RKGKYGVIS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFA805 (AFA805Q) /CSM/AF/AFA8-A/AFA805Q.Seq.d/ 2339 0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 1267 0.0
CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 1267 0.0
CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/ 1267 0.0
CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ 1267 0.0
AFE623 (AFE623Q) /CSM/AF/AFE6-A/AFE623Q.Seq.d/ 1267 0.0
SFF247 (SFF247Q) /CSM/SF/SFF2-B/SFF247Q.Seq.d/ 1259 0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/ 1259 0.0
AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/ 1259 0.0
SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/ 1255 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1112 0.0 3
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 9e-14 5
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 5e-13 5
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 6e-12 4
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 5e-10 3
CD007738|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence. 60 1e-08 2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 1e-08 2
CD716621|CD716621.1 VVB129E11_405541 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB129E11 5, mRNA sequence. 60 1e-08 2
CD008871|CD008871.1 VVB097G11_339261 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB097G11 5, mRNA sequence. 60 1e-08 2
CD719494|CD719494.1 VVB161G09_410895 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB161G09 5, mRNA sequence. 60 1e-08 2
dna update 2003. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 402 0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 215 e-111
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 213 e-110
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 213 e-109
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 211 e-109
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 213 e-107
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 221 e-107
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 221 e-107
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789. 211 e-107
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C... 218 e-106
protein update 2009. 3.26
PSORT

psg: 0.61 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.35 mip: 0.05
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFA805 is nuc

5' end seq. ID AFA805F
5' end seq.
>AFA805F.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAA----------
Length of 5' end seq. 639
3' end seq. ID AFA805Z
3' end seq.
>AFA805Z.Seq
----------AAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAG
GATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCA
GATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCT
AGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGA
TTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCC
ATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACC
ACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGT
TGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTA
GGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACAT
CGTCGTAAAGGTAAATATGGTGTAATCTCTA
Length of 3' end seq. 561
Connected seq. ID AFA805P
Connected seq.
>AFA805P.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAA----------AAGCAGGTAAA
TTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTC
GATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCA
GCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCC
GCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTG
GTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCC
GTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTT
GAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGAT
ATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACT
GGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGT
GTAATCTCTA
Length of connected seq. 1200
Full length Seq ID -
Full length Seq. -
Length of full length seq. -