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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB381
Library SF
(Link to library)
Clone ID SFB381
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14945-1
Original site URL
Representative seq. ID SFB381F
(Link to Original site)
Representative DNA sequence 
>SFB381 (SFB381Q) /CSM/SF/SFB3-D/SFB381Q.Seq.d/
TATGAAAAGAAGAATGATTTACGTTATGGTGAGAATCCACATCAAAAAGCAGCACTTTAT
CAATGTCCAGGTACAGGTGGTATTGCAAATGCACAATTATTACATGGTCCAGCTTTATCT
TATAATAATATTTTAGATGGTGATGCTGCATTGAAAGCAGTCAGAGAGTTTGATAGATGT
GCATGTGTTGTCATTTAAACATACCCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
YEKKNDLRYGENPHQKAALYQCPGTGGIANAQLLHGPALSYNNILDGDAALKAVREFDRC
ACVVI*ty---
Translated Amino Acid sequence (All Frames) 
Frame A:
YEKKNDLRYGENPHQKAALYQCPGTGGIANAQLLHGPALSYNNILDGDAALKAVREFDRC
ACVVI*ty---


Frame B:
mkrrmiyvmvrihikkqhfinvqvqvvlqmhnyymvqlyliiif*mvmlh*kqseslidv
hvlsfkht---


Frame C:
*kee*ftlw*estsksstlsmsryrwyckctiitwssfil**yfrw*cciessqrv**mc
mcchlni---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFB381 (SFB381Q) /CSM/SF/SFB3-D/SFB381Q.Seq.d/                        408   e-113
VFH313 (VFH313Q) /CSM/VF/VFH3-A/VFH313Q.Seq.d/                        391   e-108
VFG267 (VFG267Q) /CSM/VF/VFG2-C/VFG267Q.Seq.d/                        391   e-108
VFE503 (VFE503Q) /CSM/VF/VFE5-A/VFE503Q.Seq.d/                        391   e-108
VFB761 (VFB761Q) /CSM/VF/VFB7-C/VFB761Q.Seq.d/                        391   e-108
VFA189 (VFA189Q) /CSM/VF/VFA1-D/VFA189Q.Seq.d/                        391   e-108
CHC204 (CHC204Q) /CSM/CH/CHC2-A/CHC204Q.Seq.d/                        391   e-108
VFL708 (VFL708Q) /CSM/VF/VFL7-A/VFL708Q.Seq.d/                        383   e-106
CFE376 (CFE376Q) /CSM/CF/CFE3-D/CFE376Q.Seq.d/                        383   e-106
VFA104 (VFA104Q) /CSM/VF/VFA1-A/VFA104Q.Seq.d/                        351   3e-96
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   387   e-104  1
AE017145|AE017145.1 Helicobacter hepaticus ATCC 51449 section 2 of 6 of the complete genome.    56   2e-04  1
AE017025|AE017025.1 Bacillus anthracis str. Ames section 2 of 18 of the complete genome.    50   0.012  1
AP003919|AP003919.1 Oryza sativa genomic DNA, chromosome 8, BAC clone:OJ1734_E04, WORKING DRAFT SEQUENCE, 1 ordered pieces.    42   0.037  6
CB662682|CB662682.1 OSJNEd06O19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA clone OSJNEd06O19 5', mRNA sequence.    42   0.13   2
CB662615|CB662615.1 OSJNEd06M21.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA clone OSJNEd06M21 5', mRNA sequence.    42   0.14   2
AW279403|AW279403.1 sf79b03.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-2310 5', mRNA sequence.    34   0.28   2
AL929586|AL929586.19 Zebrafish DNA sequence from clone CH211-188I17.    38   0.28   3
BI702238|BI702238.1 sag44a03.y1 Gm-c1081 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1081-1542 5' similar to TR:Q9SKA6 Q9SKA6 AT2G31940 PROTEIN. ;, mRNA sequence.    34   0.30   2
BG156272|BG156272.1 saa73f04.y1 Gm-c1063 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1063-247 5', mRNA sequence.    34   0.31   2
dna update 2003.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU480573_1(EU480573|pid:none) Bacillus cereus strain BFDA96162 p...    79   6e-14
(Q81ZG8) RecName: Full=Bifunctional purine biosynthesis protein ...    79   6e-14
(Q81IP9) RecName: Full=Bifunctional purine biosynthesis protein ...    79   6e-14
AY729783_1(AY729783|pid:none) Bacillus mycoides strain WSBC 1027...    79   6e-14
CP001176_272(CP001176|pid:none) Bacillus cereus B4264, complete ...    79   6e-14
Y09252_1(Y09252|pid:none) B.cereus pur9 gene, partial.                 79   6e-14
EU480570_1(EU480570|pid:none) Bacillus cereus strain BFDA96174 p...    79   6e-14
EU480572_1(EU480572|pid:none) Bacillus cereus strain BFDA96161 p...    79   6e-14
CP001177_278(CP001177|pid:none) Bacillus cereus AH187, complete ...    79   6e-14
CP001186_264(CP001186|pid:none) Bacillus cereus G9842, complete ...    79   6e-14
protein update 2009. 5.22
PSORT 

 psg: 0.60  gvh: 0.45  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for SFB381 is cyt
5' end seq. ID SFB381F
5' end seq. 
>SFB381F.Seq
TATGAAAAGAAGAATGATTTACGTTATGGTGAGAATCCACATCAAAAAGCAGCACTTTAT
CAATGTCCAGGTACAGGTGGTATTGCAAATGCACAATTATTACATGGTCCAGCTTTATCT
TATAATAATATTTTAGATGGTGATGCTGCATTGAAAGCAGTCAGAGAGTTTGATAGATGT
GCATGTGTTGTCATTTAAACATACCC----------
Length of 5' end seq. 206
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -