NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFB270
Library SF
(Link to library)
Clone ID SFB270
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13855-1
Original site URL
Representative seq. ID SFB270Z
(Link to Original site)
Representative DNA sequence 
>SFB270 (SFB270Q) /CSM/SF/SFB2-C/SFB270Q.Seq.d/
XXXXXXXXXXGATGGGCGCTTTGATTGGAGGAGAATCAACCAAATTGGGTGAACCAATTT
CAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAA
GAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCT
CAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTGCTACAAAACCAC
CAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATA
TTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTT
CAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATCATACTGTAAATG
GTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAG
ATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTA
CTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTC
TTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAG
CTNATAAACGTCAATAAAAAAAAATTAATTAAATAAATAAATAAATAAAGAAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---MGALIGGESTKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGS
TISPWVVTMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTS
NLKYMYWTLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGT
ETNEERKFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPAXKRQ*kkin*ink*ikkt
Translated Amino Acid sequence (All Frames) 
Frame A:
---MGALIGGESTKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGS
TISPWVVTMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTS
NLKYMYWTLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGT
ETNEERKFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPAXKRQ*kkin*ink*ikkt


Frame B:
---wal*leenqpnwvnqfqlslqkiislvwyf*migvqeiskngntfhwvhswqrisaq
lyhhgllqwrhcnhllqnhqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlq
i*ntcighslnnwliil*mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vl
kqmkkensfkmvillsylvfvkvmviklvlvivkvqfyqlinvnkkklik*ink*rk


Frame C:
---grfdwrrinqig*tnfn*vckrsylwfgtfe*leckrypkmgirsigsilgkefrln
yitmgcynggiaticykttnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfk
feihvldthstigssyckwl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*
nk*rkkihsrw*fcyliwsl*r*wlsnwfw*l*rynftsx*tsikkn*lnk*inken
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/                       1306   0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/                       1306   0.0
SFB270 (SFB270Q) /CSM/SF/SFB2-C/SFB270Q.Seq.d/                       1306   0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/                       1300   0.0
AFE706 (AFE706Q) /CSM/AF/AFE7-A/AFE706Q.Seq.d/                       1300   0.0
AFN775 (AFN775Q) /CSM/AF/AFN7-D/AFN775Q.Seq.d/                       1298   0.0
CFE715 (CFE715Q) /CSM/CF/CFE7-A/CFE715Q.Seq.d/                       1296   0.0
VFE313 (VFE313Q) /CSM/VF/VFE3-A/VFE313Q.Seq.d/                       1291   0.0
AFG455 (AFG455Q) /CSM/AF/AFG4-C/AFG455Q.Seq.d/                       1285   0.0
CFA612 (CFA612Q) /CSM/CF/CFA6-A/CFA612Q.Seq.d/                       1281   0.0
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI504681|BI504681.1 BB170011A20F01.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence.    64   4e-08  2
CF446374|CF446374.1 EST682719 normalized cDNA library of onion Allium cepa cDNA clone ACAHY76, mRNA sequence.    64   3e-06  1
BM774584|BM774584.1 ra95c11.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence.    64   3e-06  1
CF440839|CF440839.1 EST677184 normalized cDNA library of onion Allium cepa cDNA clone ACAFM72, mRNA sequence.    64   3e-06  1
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read.    50   3e-06  3
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read.    48   1e-05  3
AV888124|AV888124.1 Ciona intestinalis cDNA, clone:rcicl27h05, 3' end, single read.    48   1e-05  3
CB377955|CB377955.1 rq05b07.y1 Heterodera glycines J3 Heterodera glycines cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence.    62   1e-05  1
BP018255|BP018255.1 Ciona intestinalis cDNA, clone:ciad79b21, 5' end, single read.    48   1e-05  3
AV908542|AV908542.1 Ciona intestinalis cDNA, clone:rciad79b21, 3' end, single read.    48   1e-05  3
dna update 2003.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   454   e-126
BT078080_1(BT078080|pid:none) Lepeophtheirus salmonis clone lsal...   293   5e-78
(A5PKH3) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   283   3e-75
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c...   283   4e-75
(P16930) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   283   4e-75
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr...   279   5e-74
BC044366_1(BC044366|pid:none) Danio rerio fumarylacetoacetate hy...   278   9e-74
BC165458_1(BC165458|pid:none) Danio rerio fumarylacetoacetate hy...   278   9e-74
BT074744_1(BT074744|pid:none) Osmerus mordax clone omor-rgc-510-...   278   2e-73
CP000521_3734(CP000521|pid:none) Acinetobacter baumannii ATCC 17...   277   2e-73
protein update 2009. 5.22
PSORT 

 psg: 0.69  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFB270 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFB270Z
3' end seq. 
>SFB270Z.Seq
----------GATGGGCGCTTTGATTGGAGGAGAATCAACCAAATTGGGTGAACCAATTT
CAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAA
GAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCT
CAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTGCTACAAAACCAC
CAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATA
TTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTT
CAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATCATACTGTAAATG
GTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAG
ATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTA
CTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTC
TTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAG
CTNATAAACGTCAATAAAAAAAAATTAATTAAATAAATAAATAAATAAAGAAAACT
Length of 3' end seq. 706
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -