SFB254
Library SF
(Link to library)
Clone ID SFB254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15333-1
Original site URL
Representative seq. ID SFB254P
(Link to Original site)
Representative DNA sequence
>SFB254 (SFB254Q) /CSM/SF/SFB2-C/SFB254Q.Seq.d/
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTATTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGAAATGGCATGGATT
CGTGATACCTATCAAXXXXXXXXXXAGCCTTAGAGATCCCATGTGATATCTTAATCCCAN
GCTGCCCTCGAAAAACAAATCCACATTGGTAACGTCGCCGATATTCAAGNTAAATTAATT
GGTGAAGCTGCCAACGGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGT
CATGTCATCATTCCAGATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAA
TGGTTAAAGAATCTTTCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCC
TCAAAGAAATTATTATTAGAATTTGTTGAATCAACCGTCAACAAGAAATTATCAGAAGCT
GAAAGAAGCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAA
GATACCATGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGAT
TACCGTTCTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGAATCATCT
GGTAATGTCTTCTCTTAAATATTTTAAAAAAACCCTTTAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
ifvlyi*IIMQSLARLSRTSLVQKGLVPQTIKNYSSVSQAEIDNEPRFLECFKTFFDKAA
GLTNLKPGVLNNMKECNVALRVEFPIKNEHGDVDIIAGYRAQHSHHRLPCKGGIRFSEEV
DLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIG
PGVDVPAPDMGTGEQEMAWIRDTYQ---

---ALEIPCDILIPXCPRKTNPHW*rrrysx*inw*scqrsndptc*pnppq*rschhsr
splkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*inrqqeiirs*kklnh
pwc**nryrsfrsrryhakclc*nqkdck*keh*lpfcrfiqcyhed*scl*iiw*clll
nilkkpfk


Translated Amino Acid sequence (All Frames)
Frame A:
ifvlyi*IIMQSLARLSRTSLVQKGLVPQTIKNYSSVSQAEIDNEPRFLECFKTFFDKAA
GLTNLKPGVLNNMKECNVALRVEFPIKNEHGDVDIIAGYRAQHSHHRLPCKGGIRFSEEV
DLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIG
PGVDVPAPDMGTGEQEMAWIRDTYQ---

---slrdpm*ylnpxlpsknkstlvtspifkxn*lvklptvq*phvltksssievmssfq
iss*mlvvslyhtlng*rifltfvsvv*trngknpqrnyy*nllnqpstrnyqklkea*s
smvlmksisfvqvskipckmlvlkperlqmkrtlitvlplytmls*rlklsmnhlvmssl
kyfkktl*

Frame B:
flyyifk**cnhlhvylvplwfkrvlfhkplktihqfhklklimnqdf*nvsklslikql
v*pi*nqvf*ii*knvmllsvlnsqsrmnmvmlillqvivhnihtivyhakvvfvsvkk*
iskklwp*lh**linvlssmfhlvvlkvvsvstqrntlspnvkrslvptlssyvkrissd
qvsmyqlqiwvqvnkkwhgfvipi---

---ALEIPCDILIPXCPRKTNPHW*rrrysx*inw*scqrsndptc*pnppq*rschhsr
splkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*inrqqeiirs*kklnh
pwc**nryrsfrsrryhakclc*nqkdck*keh*lpfcrfiqcyhed*scl*iiw*clll
nilkkpfk

Frame C:
fciiylnnnaitctfisylfgskgscstnh*klfisfts*n***tkifrmfqnfl**ssw
fnqfktrcfk*yerm*ccspc*ipnqe*tw*c*yycrlscttftpsftmqrwysfq*rsr
sprsyglsfiddl*mccrrcsiwwc*rwcpyrpkeihcrpt*kdhsclhsplmskefhrt
rcrctssrygyr*trngmds*yls---

---p*rshvis*sxaalekqihignvadiqxkligeaangpmtpradqillnrghviipd
lllnaggvtvsyfewlknlshvrfgrlnkkweesskklllefvestvnkklseaerslii
hgadeidivrsgledtmqnacaetrktanekntdyrsaalynaimkikavyessgnvfs*
if*knpl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFB254 (SFB254Q) /CSM/SF/SFB2-C/SFB254Q.Seq.d/ 2238 0.0
VFD217 (VFD217Q) /CSM/VF/VFD2-A/VFD217Q.Seq.d/ 1215 0.0
SFJ586 (SFJ586Q) /CSM/SF/SFJ5-D/SFJ586Q.Seq.d/ 1215 0.0
SFG859 (SFG859Q) /CSM/SF/SFG8-C/SFG859Q.Seq.d/ 1215 0.0
SFF236 (SFF236Q) /CSM/SF/SFF2-B/SFF236Q.Seq.d/ 1215 0.0
AFN728 (AFN728Q) /CSM/AF/AFN7-B/AFN728Q.Seq.d/ 1215 0.0
AFK262 (AFK262Q) /CSM/AF/AFK2-C/AFK262Q.Seq.d/ 1215 0.0
AFG496 (AFG496Q) /CSM/AF/AFG4-D/AFG496Q.Seq.d/ 1215 0.0
AFB101 (AFB101Q) /CSM/AF/AFB1-A/AFB101Q.Seq.d/ 1215 0.0
AFA583 (AFA583Q) /CSM/AF/AFA5-D/AFA583Q.Seq.d/ 1215 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD421566|CD421566.1 ku85h05.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 80 4e-24 2
CD525630|CD525630.1 kw16f01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 78 1e-23 2
CD420727|CD420727.1 ku90g10.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 74 6e-23 2
CD525857|CD525857.1 kw26g12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 74 2e-22 2
CD524962|CD524962.1 kw11g06.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 72 4e-22 2
BM880231|BM880231.1 ku06h09.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 72 6e-22 2
BI502159|BI502159.1 kt86a12.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 72 6e-22 2
BM879960|BM879960.1 ku03c02.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:O02375 O02375 PUTATIVE GLUTAMATE DEHYDROGENASE. ;, mRNA sequence. 72 6e-22 2
BQ091374|BQ091374.1 ku16e09.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 72 6e-22 2
BQ090776|BQ090776.1 ku20a10.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence. 72 6e-22 2
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54KB7) RecName: Full=Glutamate dehydrogenase, mitochondrial; ... 399 e-109
BC103336_1(BC103336|pid:none) Bos taurus glutamate dehydrogenase... 209 2e-52
AK089152_1(AK089152|pid:none) Mus musculus 10 days neonate olfac... 207 6e-52
(P26443) RecName: Full=Glutamate dehydrogenase 1, mitochondrial;... 207 6e-52
AY256856_1(AY256856|pid:none) Bos taurus brain glutamate dehydro... 207 7e-52
(P00366) RecName: Full=Glutamate dehydrogenase 1, mitochondrial;... 207 7e-52
AY138843_1(AY138843|pid:none) Bos taurus glutamate dehydrogenase... 206 1e-51
(P10860) RecName: Full=Glutamate dehydrogenase 1, mitochondrial;... 206 1e-51
S03707(S03707;S03704;S29786;S29335;S19282) glutamate dehydrogena... 206 2e-51
BX005174_8(BX005174|pid:none) Zebrafish DNA sequence from clone ... 204 5e-51
protein update 2009. 5.22
PSORT

psg: 0.73 gvh: 0.45 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for SFB254 is mit

5' end seq. ID SFB254F
5' end seq.
>SFB254F.Seq
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTATTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGAAATGGCATGGATT
CGTGATACCTATCAA----------
Length of 5' end seq. 615
3' end seq. ID SFB254Z
3' end seq.
>SFB254Z.Seq
----------AGCCTTAGAGATCCCATGTGATATCTTAATCCCANGCTGCCCTCGAAAAA
CAAATCCACATTGGTAACGTCGCCGATATTCAAGNTAAATTAATTGGTGAAGCTGCCAAC
GGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCA
GATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTT
TCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTA
TTAGAATTTGTTGAATCAACCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATC
ATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCATGCAAAAT
GCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACCGTTCTGCCGCT
TTATACAATGCTATCATGAAGATTAAAGCTGTCTATGAATCATCTGGTAATGTCTTCTCT
TAAATATTTTAAAAAAACCCTTTAAG
Length of 3' end seq. 556
Connected seq. ID SFB254P
Connected seq.
>SFB254P.Seq
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTATTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGAAATGGCATGGATT
CGTGATACCTATCAA----------AGCCTTAGAGATCCCATGTGATATCTTAATCCCAN
GCTGCCCTCGAAAAACAAATCCACATTGGTAACGTCGCCGATATTCAAGNTAAATTAATT
GGTGAAGCTGCCAACGGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGT
CATGTCATCATTCCAGATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAA
TGGTTAAAGAATCTTTCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCC
TCAAAGAAATTATTATTAGAATTTGTTGAATCAACCGTCAACAAGAAATTATCAGAAGCT
GAAAGAAGCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAA
GATACCATGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGAT
TACCGTTCTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATGAATCATCT
GGTAATGTCTTCTCTTAAATATTTTAAAAAAACCCTTTAAG
Length of connected seq. 1171
Full length Seq ID -
Full length Seq. -
Length of full length seq. -