>SFB248 (SFB248Q) /CSM/SF/SFB2-B/SFB248Q.Seq.d/
XXXXXXXXXXTTTTCAGATAATGTTCCATTAAATACTAATGAAGATGGTACAGAAAAGAA
ATATAGTTTTTATGAGGTACCATATTATAGATTCCTTTTCAATGTTGATACAAAAGAGGT
TGGTCTTCGTTTAATTAGATCAATGTTACCAATTAAATTTTCATTTTTCAATCTCATCAG
GGAAAATCCTGATTTATATGGTCCATTTTGGGTTTTAACTTCTTTAGTTTTCATTGTTGC
TGTTACTTCAAATTTAAATGAATATTTTCATTCAAGTGATCATAAAAGTTGGGAAGTTGA
TATTCAAAAGATTGTTTATAGTGCAATTACAATTTATGGTTATTCATTTGTAATTCCATT
AATTTTATGGGGTATATTTAAATGGATGAATCTTGGACTTAGATTATTGGATATGTTATG
TATCTATGGTTATACATTATTTATTTTCGTTCCAGCATCAATTCTTTGTGTAATTCCACT
TCAATTAGTTCAATGGATTATTGTAGCAATTGCATCAATTGTTTCTGGTTTGTTTTTGGT
AACAAATATCTTTACACCTTTGAAAGAGGATTTCACAAAAAGAGGTTTAATCATTTGCGC
TGTAATTGGTGCATTACATATAGGTTTAGCTTTAGTATTAAAACTTTATTTCTTTGCAAA
TAGTACTGAAAACTTTACAATCT

---SDNVPLNTNEDGTEKKYSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRE
NPDLYGPFWVLTSLVFIVAVTSNLNEYFHSSDHKSWEVDIQKIVYSAITIYGYSFVIPLI
LWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVT
NIFTPLKEDFTKRGLIICAVIGALHIGLALVLKLYFFANSTENFTI

Frame A:
---fqimfh*ilmkmvqkrnivfmryhiidsfsmliqkrlvfv*ldqcyqlnfhfsissg
kiliymvhfgf*ll*fslllllqi*mnifiqviikvgklifkrlfivqlqfmvihl*fh*
fygvylng*ildldywicyvsmvihylfsfqhqffv*fhfn*fngll*qlhqlflvcfw*
qislhl*krisqkev*sfal*lvhyi*v*l*y*nfislqivlktlqs


Frame B:
---fr*csiky**rwyrkei*fl*gtil*ipfqc*ykrgwssfn*invtn*ififqshqg
ks*fiwsilgfnffsfhcccyfkfk*ifsfk*s*klgs*yskdcl*cnynlwlficnsin
fmgyi*mdeswt*iigyvmylwlyiiyfrssinslcnstsissmdycsncincfwfvfgn
kylytfergfhkkrfnhlrcnwcityrfsfsiktlflck*y*klyn


Frame C:
---SDNVPLNTNEDGTEKKYSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRE
NPDLYGPFWVLTSLVFIVAVTSNLNEYFHSSDHKSWEVDIQKIVYSAITIYGYSFVIPLI
LWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVT
NIFTPLKEDFTKRGLIICAVIGALHIGLALVLKLYFFANSTENFTI

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH819 (SSH819Q) /CSM/SS/SSH8-A/SSH819Q.Seq.d/                       1334   0.0
SFB248 (SFB248Q) /CSM/SF/SFB2-B/SFB248Q.Seq.d/                       1334   0.0
VFL604 (VFL604Q) /CSM/VF/VFL6-A/VFL604Q.Seq.d/                       1320   0.0
SFE766 (SFE766Q) /CSM/SF/SFE7-C/SFE766Q.Seq.d/                       1314   0.0
CHC203 (CHC203Q) /CSM/CH/CHC2-A/CHC203Q.Seq.d/                       1078   0.0
CFF332 (CFF332Q) /CSM/CF/CFF3-B/CFF332Q.Seq.d/                        890   0.0
CHC614 (CHC614Q) /CSM/CH/CHC6-A/CHC614Q.Seq.d/                        561   e-159
SHL361 (SHL361Q) /CSM/SH/SHL3-C/SHL361Q.Seq.d/                         36   0.67
SFH116 (SFH116Q) /CSM/SF/SFH1-A/SFH116Q.Seq.d/                         36   0.67
SFF834 (SFF834Q) /CSM/SF/SFF8-B/SFF834Q.Seq.d/                         36   0.67

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL807381|AL807381.6 Zebrafish DNA sequence from clone CH211-222N24.    34   4e-04  10
AL596167|AL596167.1 Listeria innocua Clip11262 complete genome, segment 5/12.    38   0.002  11
AE016750|AE016750.1 Staphylococcus epidermidis ATCC 12228, section 7 of 9 of the complete genome.    32   0.002  14
AL450346|AL450346.4 Human DNA sequence from clone RP11-184C23 on chromosome 6.    38   0.002  8
AX417040|AX417040.1 Sequence 4031 from Patent WO0228891.           38   0.002  11
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5.    34   0.002  14
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34   0.003  12
AX417043|AX417043.1 Sequence 4034 from Patent WO0228891.           38   0.005  12
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36   0.005  10
AC139189|AC139189.1 Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence.    34   0.008  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TS4) RecName: Full=Protein YIPF1 homolog;                         453   e-126
BT036645_1(BT036645|pid:none) Zea mays full-length cDNA clone ZM...   154   2e-36
EU956466_1(EU956466|pid:none) Zea mays clone 1563916 yip1 domain...   154   2e-36
BT035807_1(BT035807|pid:none) Zea mays full-length cDNA clone ZM...   152   1e-35
(Q91VU1) RecName: Full=Protein YIPF1; AltName: Full=YIP1 family ...   150   3e-35
BT079680_1(BT079680|pid:none) Esox lucius clone eluc-evq-523-069...   150   4e-35
(Q6P6G5) RecName: Full=Protein YIPF1; AltName: Full=YIP1 family ...   150   4e-35
AK300240_1(AK300240|pid:none) Homo sapiens cDNA FLJ54858 complet...   148   1e-34
BC084230_1(BC084230|pid:none) Xenopus laevis hypothetical LOC495...   148   1e-34
(Q9Y548) RecName: Full=Protein YIPF1; AltName: Full=YIP1 family ...   148   1e-34

 psg: 0.75  gvh: 0.29  alm: 0.18  top: 0.40  tms: 0.40  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 60.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for SFB248 is pla

>SFB248Z.Seq
----------TTTTCAGATAATGTTCCATTAAATACTAATGAAGATGGTACAGAAAAGAA
ATATAGTTTTTATGAGGTACCATATTATAGATTCCTTTTCAATGTTGATACAAAAGAGGT
TGGTCTTCGTTTAATTAGATCAATGTTACCAATTAAATTTTCATTTTTCAATCTCATCAG
GGAAAATCCTGATTTATATGGTCCATTTTGGGTTTTAACTTCTTTAGTTTTCATTGTTGC
TGTTACTTCAAATTTAAATGAATATTTTCATTCAAGTGATCATAAAAGTTGGGAAGTTGA
TATTCAAAAGATTGTTTATAGTGCAATTACAATTTATGGTTATTCATTTGTAATTCCATT
AATTTTATGGGGTATATTTAAATGGATGAATCTTGGACTTAGATTATTGGATATGTTATG
TATCTATGGTTATACATTATTTATTTTCGTTCCAGCATCAATTCTTTGTGTAATTCCACT
TCAATTAGTTCAATGGATTATTGTAGCAATTGCATCAATTGTTTCTGGTTTGTTTTTGGT
AACAAATATCTTTACACCTTTGAAAGAGGATTTCACAAAAAGAGGTTTAATCATTTGCGC
TGTAATTGGTGCATTACATATAGGTTTAGCTTTAGTATTAAAACTTTATTTCTTTGCAAA
TAGTACTGAAAACTTTACAATCT