AFH816
Library AF
(Link to library)
Clone ID AFH816
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFH816Z
(Link to Original site)
Representative DNA sequence
>AFH816 (AFH816Q) /CSM/AF/AFH8-A/AFH816Q.Seq.d/
XXXXXXXXXXAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGA
AGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCT
CTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCAT
TCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTA
AATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTT
TCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGT
GCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACG
TTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCG
AAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCT
CTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTG
CCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTC
TTCTGCTAAACANANAATATAATAATTAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---IATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSF
DTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWC
GHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPIS
YEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNXXYNN*


Translated Amino Acid sequence (All Frames)
Frame A:
---IATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSF
DTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWC
GHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPIS
YEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNXXYNN*


Frame B:
---slphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkkkpshs
ipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnstlhga
viarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkkiqsl
mkvkemii*tllnsfkitlplnsnyhhlklmimxi*krffc*txniii


Frame C:
---ryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*krnllir
yrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilrsmvr
slqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrksnll
*rskk*syelc*ihsr*rch*iqitiisn***cxskkdssakxxi**l


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFH816 (AFH816Q) /CSM/AF/AFH8-A/AFH816Q.Seq.d/ 1328 0.0
AFM517 (AFM517Q) /CSM/AF/AFM5-A/AFM517Q.Seq.d/ 1318 0.0
AFN461 (AFN461Q) /CSM/AF/AFN4-C/AFN461Q.Seq.d/ 1314 0.0
AFM548 (AFM548Q) /CSM/AF/AFM5-B/AFM548Q.Seq.d/ 1312 0.0
AFK217 (AFK217Q) /CSM/AF/AFK2-A/AFK217Q.Seq.d/ 1312 0.0
SFL246 (SFL246Q) /CSM/SF/SFL2-B/SFL246Q.Seq.d/ 1306 0.0
SFK855 (SFK855Q) /CSM/SF/SFK8-C/SFK855Q.Seq.d/ 1306 0.0
SFI119 (SFI119Q) /CSM/SF/SFI1-A/SFI119Q.Seq.d/ 1306 0.0
AFO686 (AFO686Q) /CSM/AF/AFO6-D/AFO686Q.Seq.d/ 1306 0.0
AFO368 (AFO368Q) /CSM/AF/AFO3-C/AFO368Q.Seq.d/ 1306 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 5e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 5e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 5e-08 1
BC067155|BC067155.1 Danio rerio zgc:77086, mRNA (cDNA clone MGC:77086 IMAGE:6960343), complete cds. 70 5e-08 1
dna update 2004. 6.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 170 3e-41
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 167 2e-40
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 166 8e-40
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 166 8e-40
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 160 2e-38
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 159 9e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 154 2e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 151 1e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 150 3e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 3e-35
protein update 2009. 4.22
PSORT

psg: 0.86 gvh: 0.36 alm: 0.43 top: 0.50 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFH816 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFH816Z
3' end seq.
>AFH816Z.Seq
----------AATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGA
AGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCT
CTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCAT
TCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTA
AATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTT
TCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGT
GCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACG
TTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCG
AAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCT
CTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTG
CCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTC
TTCTGCTAAACANANAATATAATAATTAA
Length of 3' end seq. 679
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -