SFB215
Library SF
(Link to library)
Clone ID SFB215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID SFB215P
(Link to Original site)
Representative DNA sequence
>SFB215 (SFB215Q) /CSM/SF/SFB2-A/SFB215Q.Seq.d/
ATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAGAAATAACAATATCA
ATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAACAGTTGAAGATCTA
AAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAGTTTTAACACTTGAT
GGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTAAAGGTGGTGATTTC
TTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCACAACAACCCCAACAA
CCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAGATCCTCTCAATTCA
CCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAACTCAAGTTATAAAT
TCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAATTCCTTACTCACTTT
GTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAAAAGATCCATATGGT
GAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATATTGAAAAAAATATG
CAACATGCTATGGAACATACAXXXXXXXXXXTTGGATTTAAATAGAGGTGTATTACNAAT
TGCAAATGAAAAGNNTTGAATTCCTTCATGANAAAGATTTAAAGGAGATTTTAAATAAAG
ANCAAAATGATTTAGAAGAAGATACTAAAANAGCNNCTGNTAATAGTCTTTCNCCTTCNN
CAACTTCAACCCACTACCACTACCACTACCACTACTTCACCCCAAACTCCAACTAATGCC
ACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACACTAGACCTCCA
ATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACAAATCAA
TATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCA
ATTAGACTTTTAACTCAAGCTAAAGGCAATGTTGAATGTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
IYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVNNQVLTLD
GKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQPQRDPLNS
PQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQELALKDPYG
EEYQKLAYQHIQQQNIEKNMQHAMEHT---

---LDLNRGVLXIANEKX*ips*xrfkgdfk*rxk*frrry*xsxx**sfxfxnfnplpl
plpllhpklqlmplll*iiiiiiitttttldlqlihhqlqrhrnqhhnqlqinmllnpis
kplldlvvqeirqldf*lklkamlnv


Translated Amino Acid sequence (All Frames)
Frame A:
IYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVNNQVLTLD
GKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQPQRDPLNS
PQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQELALKDPYG
EEYQKLAYQHIQQQNIEKNMQHAMEHT---

---LDLNRGVLXIANEKX*ips*xrfkgdfk*rxk*frrry*xsxx**sfxfxnfnplpl
plpllhpklqlmplll*iiiiiiitttttldlqlihhqlqrhrnqhhnqlqinmllnpis
kplldlvvqeirqldf*lklkamlnv

Frame B:
fiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf**tikf*hlm
eky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnnvnhkeilsih
hkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*nksknnvvfknwh*kihmv
ksikn*linifnnkilkkicnmlwni---

---wi*ievyyxlqmkxxeflhxkdlkeilnkxqndleedtkxaxxnslspsxtsthyhy
hyhyftpnsn*chfsck*******qqqqh*tsn*fttsckdtatntttnyksicf*iqyp
npywtwlfkr*gn*tfnss*rqc*ml

Frame C:
lsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhnfseqssfnt*w
ksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttttsttkrssqft
tryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrtnqrttsysrigikrsiw*
rvskislstysttky*kkyatcygty---

---gfk*rcitnck*kxlnsfmxki*rrf*ikxkmi*kkilkxxlxivfxlxqlqptttt
ttttspqtptnatspvnnnnnnnnnnnntrppinsppvaktpqptpqpttnqyasesniq
tliglgcsrdkairlltqakgnvec

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFB215 (SFB215Q) /CSM/SF/SFB2-A/SFB215Q.Seq.d/ 835 0.0
VFE249 (VFE249Q) /CSM/VF/VFE2-C/VFE249Q.Seq.d/ 531 e-150
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/ 531 e-150
SLC513 (SLC513Q) /CSM/SL/SLC5-A/SLC513Q.Seq.d/ 531 e-150
SFL472 (SFL472Q) /CSM/SF/SFL4-C/SFL472Q.Seq.d/ 531 e-150
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/ 531 e-150
SFK703 (SFK703Q) /CSM/SF/SFK7-A/SFK703Q.Seq.d/ 531 e-150
SFK605 (SFK605Q) /CSM/SF/SFK6-A/SFK605Q.Seq.d/ 531 e-150
SFJ818 (SFJ818Q) /CSM/SF/SFJ8-A/SFJ818Q.Seq.d/ 531 e-150
SFJ734 (SFJ734Q) /CSM/SF/SFJ7-B/SFJ734Q.Seq.d/ 531 e-150

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 50 4e-11 14
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 46 1e-09 13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 44 2e-06 16
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 48 9e-06 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 52 2e-04 8
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 48 2e-04 9
AF024654|AF024654.1 Dictyostelium discoideum hybrid histidine kinase DHKB (dhkB) gene, complete cds. 50 2e-04 3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 38 3e-04 15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 50 5e-04 11
AQ935615|AQ935615.1 CpG2561B CpIOWAgDNA1 Cryptosporidium parvum genomic, DNA sequence. 52 5e-04 2
dna update 2003.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog; 326 7e-88
AK067974_1(AK067974|pid:none) Oryza sativa Japonica Group cDNA c... 79 3e-13
EF678606_1(EF678606|pid:none) Picea sitchensis clone WS02929_F19... 69 3e-10
DQ311262_1(DQ311262|pid:none) Bombyx mori DNA-damage inducible p... 68 6e-10
BT077255_1(BT077255|pid:none) Caligus rogercresseyi clone crog-e... 64 1e-08
BT076559_1(BT076559|pid:none) Caligus rogercresseyi clone crog-e... 63 1e-08
(A0JPP7) RecName: Full=Protein DDI1 homolog 1; &BC127531_1(BC12... 63 1e-08
(Q9DAF3) RecName: Full=Protein DDI1 homolog 1; &AK005882_1(AK00... 60 2e-07
AY085083_1(AY085083|pid:none) Arabidopsis thaliana clone 12734 m... 59 2e-07
DQ683059_1(DQ683059|pid:none) Synthetic construct DDI1 (DDI1) ge... 59 2e-07
protein update 2009. 5.22
PSORT

psg: 0.88 gvh: 0.34 alm: 0.39 top: 0.37 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SFB215 is cyt

5' end seq. ID SFB215F
5' end seq.
>SFB215F.Seq
ATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAGAAATAACAATATCA
ATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAACAGTTGAAGATCTA
AAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAGTTTTAACACTTGAT
GGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTAAAGGTGGTGATTTC
TTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCACAACAACCCCAACAA
CCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAGATCCTCTCAATTCA
CCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAACTCAAGTTATAAAT
TCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAATTCCTTACTCACTTT
GTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAAAAGATCCATATGGT
GAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATATTGAAAAAAATATG
CAACATGCTATGGAACATACA----------
Length of 5' end seq. 621
3' end seq. ID SFB215Z
3' end seq.
>SFB215Z.Seq
----------TTGGATTTAAATAGAGGTGTATTACNAATTGCAAATGAAAAGNNTTGAAT
TCCTTCATGANAAAGATTTAAAGGAGATTTTAAATAAAGANCAAAATGATTTAGAAGAAG
ATACTAAAANAGCNNCTGNTAATAGTCTTTCNCCTTCNNCAACTTCAACCCACTACCACT
ACCACTACCACTACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAAATAATAAT
AATAATAATAATAACAACAACAACAACACTAGACCTCCAATTAATTCACCACCAGTTGCA
AAGACACCGCAACCAACACCACAACCAACTACAAATCAATATGCTTCTGAATCCAATATC
CAAACCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAACTCAAGCT
AAAGGCAATGTTGAATGTTG
Length of 3' end seq. 430
Connected seq. ID SFB215P
Connected seq.
>SFB215P.Seq
ATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAGAAATAACAATATCA
ATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAACAGTTGAAGATCTA
AAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAGTTTTAACACTTGAT
GGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTAAAGGTGGTGATTTC
TTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCACAACAACCCCAACAA
CCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAGATCCTCTCAATTCA
CCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAACTCAAGTTATAAAT
TCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAATTCCTTACTCACTTT
GTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAAAAGATCCATATGGT
GAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATATTGAAAAAAATATG
CAACATGCTATGGAACATACA----------TTGGATTTAAATAGAGGTGTATTACNAAT
TGCAAATGAAAAGNNTTGAATTCCTTCATGANAAAGATTTAAAGGAGATTTTAAATAAAG
ANCAAAATGATTTAGAAGAAGATACTAAAANAGCNNCTGNTAATAGTCTTTCNCCTTCNN
CAACTTCAACCCACTACCACTACCACTACCACTACTTCACCCCAAACTCCAACTAATGCC
ACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACACTAGACCTCCA
ATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACAAATCAA
TATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCA
ATTAGACTTTTAACTCAAGCTAAAGGCAATGTTGAATGTTG
Length of connected seq. 1051
Full length Seq ID -
Full length Seq. -
Length of full length seq. -